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HNRNPM (heterogeneous nuclear ribonucleoprotein M)

Identity

Alias_namesNAGR1
HNRPM
Alias_symbol (synonym)HTGR1
HNRNPM4
HNRPM4
CEAR
Other aliashnRNP M
HGNC (Hugo) HNRNPM
LocusID (NCBI) 4670
Atlas_Id 50719
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8509712 and ends at 8554002 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C11orf49 (11p11.2) / HNRNPM (19p13.2)DDX19B (16q22.1) / HNRNPM (19p13.2)HIST1H3F (6p22.2) / HNRNPM (19p13.2)
HNRNPM (19p13.2) / CBX1 (17q21.32)HNRNPM (19p13.2) / CERS4 (19p13.2)HNRNPM (19p13.2) / CHCHD3 (7q32.3)
HNRNPM (19p13.2) / DENND1A (9q33.3)HNRNPM (19p13.2) / HNRNPM (19p13.2)HNRNPM (19p13.2) / PC (11q13.2)
HNRNPM (19p13.2) / SLC25A23 (19p13.3)HNRNPM (19p13.2) / ZNF142 (2q35)IFITM2 (11p15.5) / HNRNPM (19p13.2)
LRPAP1 (4p16.3) / HNRNPM (19p13.2)SETBP1 (18q12.3) / HNRNPM (19p13.2)WNT9A (1q42.13) / HNRNPM (19p13.2)
_2 () / HNRNPM (19p13.2)HNRNPM 19p13.2 / CERS4 19p13.2HNRNPM 19p13.2 / PC 11q13.2
HNRNPM 19p13.2 / SLC25A23 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPM   5046
Cards
Entrez_Gene (NCBI)HNRNPM  4670  heterogeneous nuclear ribonucleoprotein M
AliasesCEAR; HNRNPM4; HNRPM; HNRPM4; 
HTGR1; NAGR1; hnRNP
GeneCards (Weizmann)HNRNPM
Ensembl hg19 (Hinxton)ENSG00000099783 [Gene_View]  chr19:8509712-8554002 [Contig_View]  HNRNPM [Vega]
Ensembl hg38 (Hinxton)ENSG00000099783 [Gene_View]  chr19:8509712-8554002 [Contig_View]  HNRNPM [Vega]
ICGC DataPortalENSG00000099783
TCGA cBioPortalHNRNPM
AceView (NCBI)HNRNPM
Genatlas (Paris)HNRNPM
WikiGenes4670
SOURCE (Princeton)HNRNPM
Genetics Home Reference (NIH)HNRNPM
Genomic and cartography
GoldenPath hg19 (UCSC)HNRNPM  -     chr19:8509712-8554002 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HNRNPM  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblHNRNPM - 19p13.2 [CytoView hg19]  HNRNPM - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIHNRNPM [Mapview hg19]  HNRNPM [Mapview hg38]
OMIM160994   
Gene and transcription
Genbank (Entrez)AA244120 AB209733 AF061832 AK024911 AK309659
RefSeq transcript (Entrez)NM_001297418 NM_005968 NM_031203
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_029850 NT_011295 NW_004929413
Consensus coding sequences : CCDS (NCBI)HNRNPM
Cluster EST : UnigeneHs.666214 [ NCBI ]
CGAP (NCI)Hs.666214
Alternative Splicing GalleryENSG00000099783
Gene ExpressionHNRNPM [ NCBI-GEO ]   HNRNPM [ EBI - ARRAY_EXPRESS ]   HNRNPM [ SEEK ]   HNRNPM [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4670
GTEX Portal (Tissue expression)HNRNPM
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52272   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52272  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52272
Splice isoforms : SwissVarP52272
PhosPhoSitePlusP52272
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP_M    HnRNP_M_PY-NLS    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)HnRNP_M (PF11532)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam11532    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPM
DMDM Disease mutations4670
Blocks (Seattle)HNRNPM
PDB (SRS)2DGV    2DH9    2DO0    2OT8   
PDB (PDBSum)2DGV    2DH9    2DO0    2OT8   
PDB (IMB)2DGV    2DH9    2DO0    2OT8   
PDB (RSDB)2DGV    2DH9    2DO0    2OT8   
Structural Biology KnowledgeBase2DGV    2DH9    2DO0    2OT8   
SCOP (Structural Classification of Proteins)2DGV    2DH9    2DO0    2OT8   
CATH (Classification of proteins structures)2DGV    2DH9    2DO0    2OT8   
SuperfamilyP52272
Human Protein AtlasENSG00000099783
Peptide AtlasP52272
HPRD01188
IPIIPI00171903   IPI00383296   IPI01011335   IPI01014861   
Protein Interaction databases
DIP (DOE-UCLA)P52272
IntAct (EBI)P52272
FunCoupENSG00000099783
BioGRIDHNRNPM
STRING (EMBL)HNRNPM
ZODIACHNRNPM
Ontologies - Pathways
QuickGOP52272
Ontology : AmiGOnucleotide binding  alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  nucleolus  integral component of plasma membrane  fibroblast growth factor receptor signaling pathway  cell surface  gene expression  membrane  nuclear matrix  protein domain specific binding  extracellular matrix  paraspeckles  poly(A) RNA binding  calcium-dependent protein binding  extracellular exosome  catalytic step 2 spliceosome  cellular response to lipopolysaccharide  positive regulation of protein localization to nucleus  positive regulation of protein import  protein antigen binding  cellular response to carcinoembryonic antigen  
Ontology : EGO-EBInucleotide binding  alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  nucleolus  integral component of plasma membrane  fibroblast growth factor receptor signaling pathway  cell surface  gene expression  membrane  nuclear matrix  protein domain specific binding  extracellular matrix  paraspeckles  poly(A) RNA binding  calcium-dependent protein binding  extracellular exosome  catalytic step 2 spliceosome  cellular response to lipopolysaccharide  positive regulation of protein localization to nucleus  positive regulation of protein import  protein antigen binding  cellular response to carcinoembryonic antigen  
Pathways : KEGGSpliceosome   
NDEx NetworkHNRNPM
Atlas of Cancer Signalling NetworkHNRNPM
Wikipedia pathwaysHNRNPM
Orthology - Evolution
OrthoDB4670
GeneTree (enSembl)ENSG00000099783
Phylogenetic Trees/Animal Genes : TreeFamHNRNPM
HOVERGENP52272
HOGENOMP52272
Homologs : HomoloGeneHNRNPM
Homology/Alignments : Family Browser (UCSC)HNRNPM
Gene fusions - Rearrangements
Fusion : MitelmanHNRNPM/CERS4 [19p13.2/19p13.2]  
Fusion : MitelmanHNRNPM/PC [19p13.2/11q13.2]  [t(11;19)(q13;p13)]  
Fusion : MitelmanHNRNPM/SLC25A23 [19p13.2/19p13.3]  [t(19;19)(p13;p13)]  
Fusion: TCGAHNRNPM 19p13.2 CERS4 19p13.2 BRCA
Fusion: TCGAHNRNPM 19p13.2 PC 11q13.2 HNSC
Fusion: TCGAHNRNPM 19p13.2 SLC25A23 19p13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPM
dbVarHNRNPM
ClinVarHNRNPM
1000_GenomesHNRNPM 
Exome Variant ServerHNRNPM
ExAC (Exome Aggregation Consortium)HNRNPM (select the gene name)
Genetic variants : HAPMAP4670
Genomic Variants (DGV)HNRNPM [DGVbeta]
DECIPHER (Syndromes)19:8509712-8554002  ENSG00000099783
CONAN: Copy Number AnalysisHNRNPM 
Mutations
ICGC Data PortalHNRNPM 
TCGA Data PortalHNRNPM 
Broad Tumor PortalHNRNPM
OASIS PortalHNRNPM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPM
DgiDB (Drug Gene Interaction Database)HNRNPM
DoCM (Curated mutations)HNRNPM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPM (select a term)
intoGenHNRNPM
Cancer3DHNRNPM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM160994   
Orphanet
MedgenHNRNPM
Genetic Testing Registry HNRNPM
NextProtP52272 [Medical]
TSGene4670
GENETestsHNRNPM
Huge Navigator HNRNPM [HugePedia]
snp3D : Map Gene to Disease4670
BioCentury BCIQHNRNPM
ClinGenHNRNPM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4670
Chemical/Pharm GKB GenePA29370
Clinical trialHNRNPM
Miscellaneous
canSAR (ICR)HNRNPM (select the gene name)
Probes
Litterature
PubMed115 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPM
EVEXHNRNPM
GoPubMedHNRNPM
iHOPHNRNPM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:27 CET 2017

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