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HNRNPR (heterogeneous nuclear ribonucleoprotein R)

Identity

Alias_namesHNRPR
Alias_symbol (synonym)hnRNP-R
Other alias
HGNC (Hugo) HNRNPR
LocusID (NCBI) 10236
Atlas_Id 40842
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23304690 and ends at 23344364 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HNRNPR (1p36.12) / KDM1A (1p36.12)HNRNPR (1p36.12) / MEF2C (5q14.3)HNRNPR (1p36.12) / TXLNA (1p35.1)
RPL36A-HNRNPH2 (Xq22.1) / HNRNPR (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPR   5047
Cards
Entrez_Gene (NCBI)HNRNPR  10236  heterogeneous nuclear ribonucleoprotein R
AliasesHNRPR; hnRNP-R
GeneCards (Weizmann)HNRNPR
Ensembl hg19 (Hinxton)ENSG00000125944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125944 [Gene_View]  chr1:23304690-23344364 [Contig_View]  HNRNPR [Vega]
ICGC DataPortalENSG00000125944
TCGA cBioPortalHNRNPR
AceView (NCBI)HNRNPR
Genatlas (Paris)HNRNPR
WikiGenes10236
SOURCE (Princeton)HNRNPR
Genetics Home Reference (NIH)HNRNPR
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPR  -     chr1:23304690-23344364 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPR  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblHNRNPR - 1p36.12 [CytoView hg19]  HNRNPR - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIHNRNPR [Mapview hg19]  HNRNPR [Mapview hg38]
OMIM607201   
Gene and transcription
Genbank (Entrez)AF000364 AK001846 AK098580 AK297382 AK297405
RefSeq transcript (Entrez)NM_001102397 NM_001102398 NM_001102399 NM_001297620 NM_001297621 NM_001297622 NM_005826
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPR
Cluster EST : UnigeneHs.373763 [ NCBI ]
CGAP (NCI)Hs.373763
Alternative Splicing GalleryENSG00000125944
Gene ExpressionHNRNPR [ NCBI-GEO ]   HNRNPR [ EBI - ARRAY_EXPRESS ]   HNRNPR [ SEEK ]   HNRNPR [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10236
GTEX Portal (Tissue expression)HNRNPR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43390   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43390  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43390
Splice isoforms : SwissVarO43390
PhosPhoSitePlusO43390
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP_R/Q_splicing_fac    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPR
DMDM Disease mutations10236
Blocks (Seattle)HNRNPR
PDB (SRS)2DK2   
PDB (PDBSum)2DK2   
PDB (IMB)2DK2   
PDB (RSDB)2DK2   
Structural Biology KnowledgeBase2DK2   
SCOP (Structural Classification of Proteins)2DK2   
CATH (Classification of proteins structures)2DK2   
SuperfamilyO43390
Human Protein AtlasENSG00000125944
Peptide AtlasO43390
HPRD06228
IPIIPI00012074   IPI00856038   IPI00941649   IPI00910614   IPI00856037   
Protein Interaction databases
DIP (DOE-UCLA)O43390
IntAct (EBI)O43390
FunCoupENSG00000125944
BioGRIDHNRNPR
STRING (EMBL)HNRNPR
ZODIACHNRNPR
Ontologies - Pathways
QuickGOO43390
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  mRNA 3'-UTR binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  nucleolus  endoplasmic reticulum  mRNA processing  circadian rhythm  gene expression  dendrite  growth cone  intracellular ribonucleoprotein complex  negative regulation of catalytic activity  axon terminus  positive regulation of mRNA catabolic process  mRNA destabilization  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  mRNA 3'-UTR binding  protein binding  nucleoplasm  nucleoplasm  spliceosomal complex  nucleolus  endoplasmic reticulum  mRNA processing  circadian rhythm  gene expression  dendrite  growth cone  intracellular ribonucleoprotein complex  negative regulation of catalytic activity  axon terminus  positive regulation of mRNA catabolic process  mRNA destabilization  catalytic step 2 spliceosome  
NDEx NetworkHNRNPR
Atlas of Cancer Signalling NetworkHNRNPR
Wikipedia pathwaysHNRNPR
Orthology - Evolution
OrthoDB10236
GeneTree (enSembl)ENSG00000125944
Phylogenetic Trees/Animal Genes : TreeFamHNRNPR
HOVERGENO43390
HOGENOMO43390
Homologs : HomoloGeneHNRNPR
Homology/Alignments : Family Browser (UCSC)HNRNPR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPR
dbVarHNRNPR
ClinVarHNRNPR
1000_GenomesHNRNPR 
Exome Variant ServerHNRNPR
ExAC (Exome Aggregation Consortium)HNRNPR (select the gene name)
Genetic variants : HAPMAP10236
Genomic Variants (DGV)HNRNPR [DGVbeta]
DECIPHERHNRNPR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPR 
Mutations
ICGC Data PortalHNRNPR 
TCGA Data PortalHNRNPR 
Broad Tumor PortalHNRNPR
OASIS PortalHNRNPR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPR
DgiDB (Drug Gene Interaction Database)HNRNPR
DoCM (Curated mutations)HNRNPR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPR (select a term)
intoGenHNRNPR
Cancer3DHNRNPR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607201   
Orphanet
MedgenHNRNPR
Genetic Testing Registry HNRNPR
NextProtO43390 [Medical]
TSGene10236
GENETestsHNRNPR
Target ValidationHNRNPR
Huge Navigator HNRNPR [HugePedia]
snp3D : Map Gene to Disease10236
BioCentury BCIQHNRNPR
ClinGenHNRNPR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10236
Chemical/Pharm GKB GenePA162391459
Clinical trialHNRNPR
Miscellaneous
canSAR (ICR)HNRNPR (select the gene name)
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPR
EVEXHNRNPR
GoPubMedHNRNPR
iHOPHNRNPR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:11:59 CEST 2017

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