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HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1)

Identity

Alias_namesHNRPUL1
Alias_symbol (synonym)E1B-AP5
E1BAP5
FLJ12944
Other alias
HGNC (Hugo) HNRNPUL1
LocusID (NCBI) 11100
Atlas_Id 53602
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41265050 and ends at 41307783 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GAS5 (1q25.1) / HNRNPUL1 (19q13.2)GPATCH8 (17q21.31) / HNRNPUL1 (19q13.2)HIVEP3 (1p34.2) / HNRNPUL1 (19q13.2)
HNRNPA2B1 (7p15.2) / HNRNPUL1 (19q13.2)HNRNPUL1 (19q13.2) / DNAJC14 (12q13.2)HNRNPUL1 (19q13.2) / OTUD7B (1q21.2)
HNRNPUL1 (19q13.2) / PDXDC1 (16p13.11)HNRNPUL1 (19q13.2) / RAP2B (3q25.2)KIRREL3 (11q24.2) / HNRNPUL1 (19q13.2)
MALAT1 (11q13.1) / HNRNPUL1 (19q13.2)MAML1 (5q35.3) / HNRNPUL1 (19q13.2)MEF2D (1q22) / HNRNPUL1 (19q13.2)
NADSYN1 (11q13.4) / HNRNPUL1 (19q13.2)RPS19 (19q13.2) / HNRNPUL1 (19q13.2)SLC35B1 (17q21.33) / HNRNPUL1 (19q13.2)
SNORD104 (17q23.3) / HNRNPUL1 (19q13.2)TGFB1 (19q13.2) / HNRNPUL1 (19q13.2)TNC (9q33.1) / HNRNPUL1 (19q13.2)
UTP23 (8q24.11) / HNRNPUL1 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPUL1   17011
Cards
Entrez_Gene (NCBI)HNRNPUL1  11100  heterogeneous nuclear ribonucleoprotein U like 1
AliasesE1B-AP5; E1BAP5; HNRPUL1
GeneCards (Weizmann)HNRNPUL1
Ensembl hg19 (Hinxton)ENSG00000105323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105323 [Gene_View]  chr19:41265050-41307783 [Contig_View]  HNRNPUL1 [Vega]
ICGC DataPortalENSG00000105323
TCGA cBioPortalHNRNPUL1
AceView (NCBI)HNRNPUL1
Genatlas (Paris)HNRNPUL1
WikiGenes11100
SOURCE (Princeton)HNRNPUL1
Genetics Home Reference (NIH)HNRNPUL1
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPUL1  -     chr19:41265050-41307783 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPUL1  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblHNRNPUL1 - 19q13.2 [CytoView hg19]  HNRNPUL1 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIHNRNPUL1 [Mapview hg19]  HNRNPUL1 [Mapview hg38]
OMIM605800   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001301016 NM_001321208 NM_001321211 NM_007040 NM_144732 NM_144733 NM_144734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPUL1
Cluster EST : UnigeneHs.718642 [ NCBI ]
CGAP (NCI)Hs.718642
Alternative Splicing GalleryENSG00000105323
Gene ExpressionHNRNPUL1 [ NCBI-GEO ]   HNRNPUL1 [ EBI - ARRAY_EXPRESS ]   HNRNPUL1 [ SEEK ]   HNRNPUL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPUL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11100
GTEX Portal (Tissue expression)HNRNPUL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUJ2
Splice isoforms : SwissVarQ9BUJ2
PhosPhoSitePlusQ9BUJ2
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    SAP (PS50800)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom    hnRNP_U-like_1    P-loop_NTPase    SAP_dom    SPRY_dom   
Domain families : Pfam (Sanger)SAP (PF02037)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam02037    pfam00622   
Domain families : Smart (EMBL)SAP (SM00513)  SPRY (SM00449)  
Conserved Domain (NCBI)HNRNPUL1
DMDM Disease mutations11100
Blocks (Seattle)HNRNPUL1
SuperfamilyQ9BUJ2
Human Protein AtlasENSG00000105323
Peptide AtlasQ9BUJ2
HPRD10428
IPIIPI00013070   IPI00167147   IPI00402391   IPI00736859   IPI00386971   IPI01009355   IPI00258093   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUJ2
IntAct (EBI)Q9BUJ2
FunCoupENSG00000105323
BioGRIDHNRNPUL1
STRING (EMBL)HNRNPUL1
ZODIACHNRNPUL1
Ontologies - Pathways
QuickGOQ9BUJ2
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  RNA processing  response to virus  enzyme binding  intracellular ribonucleoprotein complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  RNA processing  response to virus  enzyme binding  intracellular ribonucleoprotein complex  
Pathways : KEGGInfluenza A   
NDEx NetworkHNRNPUL1
Atlas of Cancer Signalling NetworkHNRNPUL1
Wikipedia pathwaysHNRNPUL1
Orthology - Evolution
OrthoDB11100
GeneTree (enSembl)ENSG00000105323
Phylogenetic Trees/Animal Genes : TreeFamHNRNPUL1
HOVERGENQ9BUJ2
HOGENOMQ9BUJ2
Homologs : HomoloGeneHNRNPUL1
Homology/Alignments : Family Browser (UCSC)HNRNPUL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPUL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPUL1
dbVarHNRNPUL1
ClinVarHNRNPUL1
1000_GenomesHNRNPUL1 
Exome Variant ServerHNRNPUL1
ExAC (Exome Aggregation Consortium)HNRNPUL1 (select the gene name)
Genetic variants : HAPMAP11100
Genomic Variants (DGV)HNRNPUL1 [DGVbeta]
DECIPHERHNRNPUL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPUL1 
Mutations
ICGC Data PortalHNRNPUL1 
TCGA Data PortalHNRNPUL1 
Broad Tumor PortalHNRNPUL1
OASIS PortalHNRNPUL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPUL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPUL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPUL1
DgiDB (Drug Gene Interaction Database)HNRNPUL1
DoCM (Curated mutations)HNRNPUL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPUL1 (select a term)
intoGenHNRNPUL1
Cancer3DHNRNPUL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605800   
Orphanet
MedgenHNRNPUL1
Genetic Testing Registry HNRNPUL1
NextProtQ9BUJ2 [Medical]
TSGene11100
GENETestsHNRNPUL1
Target ValidationHNRNPUL1
Huge Navigator HNRNPUL1 [HugePedia]
snp3D : Map Gene to Disease11100
BioCentury BCIQHNRNPUL1
ClinGenHNRNPUL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11100
Chemical/Pharm GKB GenePA162391519
Clinical trialHNRNPUL1
Miscellaneous
canSAR (ICR)HNRNPUL1 (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPUL1
EVEXHNRNPUL1
GoPubMedHNRNPUL1
iHOPHNRNPUL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:55:34 CEST 2017

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