Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HNRNPUL2 (heterogeneous nuclear ribonucleoprotein U like 2)

Identity

Alias_namesHNRPUL2
heterogeneous nuclear ribonucleoprotein U-like 2
Alias_symbol (synonym)DKFZp762N1910
Other aliasSAF-A2
HGNC (Hugo) HNRNPUL2
LocusID (NCBI) 221092
Atlas_Id 54365
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62712625 and ends at 62727385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BSCL2 (11q12.3) / HNRNPUL2 (11q12.3)DCTN2 (12q13.3) / HNRNPUL2 (11q12.3)HNRNPUL2 (11q12.3) / AHNAK (11q12.3)
HNRNPUL2 (11q12.3) / BSCL2 (11q12.3)HNRNPUL2 (11q12.3) / C11orf49 (11p11.2)HNRNPUL2 (11q12.3) / NR4A1 (12q13.13)
HNRNPUL2 (11q12.3) / NRSN2 (20p13)HNRNPUL2 (11q12.3) / TNFAIP1 (17q11.2)HNRNPUL2 (11q12.3) / TTC9C (11q12.3)
HNRNPUL2 (11q12.3) / YY1AP1 (1q22)KCNAB1 (3q25.31) / HNRNPUL2 (11q12.3)SIRPA (20p13) / HNRNPUL2 (11q12.3)
HNRNPUL2 11q12.3 / TTC9C 11q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  HNRNPUL2/AHNAK (11q12)
HNRNPUL2/TTC9C (11q12)

External links

Nomenclature
HGNC (Hugo)HNRNPUL2   25451
Cards
Entrez_Gene (NCBI)HNRNPUL2  221092  heterogeneous nuclear ribonucleoprotein U like 2
AliasesHNRPUL2; SAF-A2
GeneCards (Weizmann)HNRNPUL2
Ensembl hg19 (Hinxton)ENSG00000214753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214753 [Gene_View]  ENSG00000214753 [Sequence]  chr11:62712625-62727385 [Contig_View]  HNRNPUL2 [Vega]
ICGC DataPortalENSG00000214753
TCGA cBioPortalHNRNPUL2
AceView (NCBI)HNRNPUL2
Genatlas (Paris)HNRNPUL2
WikiGenes221092
SOURCE (Princeton)HNRNPUL2
Genetics Home Reference (NIH)HNRNPUL2
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPUL2  -     chr11:62712625-62727385 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPUL2  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblHNRNPUL2 - 11q12.3 [CytoView hg19]  HNRNPUL2 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBIHNRNPUL2 [Mapview hg19]  HNRNPUL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI992017 BC029105 BC032369 DQ470474
RefSeq transcript (Entrez)NM_001079559
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPUL2
Cluster EST : UnigeneHs.657058 [ NCBI ]
CGAP (NCI)Hs.657058
Alternative Splicing GalleryENSG00000214753
Gene ExpressionHNRNPUL2 [ NCBI-GEO ]   HNRNPUL2 [ EBI - ARRAY_EXPRESS ]   HNRNPUL2 [ SEEK ]   HNRNPUL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPUL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221092
GTEX Portal (Tissue expression)HNRNPUL2
Human Protein AtlasENSG00000214753-HNRNPUL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1KMD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1KMD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1KMD3
Splice isoforms : SwissVarQ1KMD3
PhosPhoSitePlusQ1KMD3
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    SAP (PS50800)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom_sf    P-loop_NTPase    SAP_dom    SAP_dom_sf    SPRY_dom    SPRY_hnRNP_U   
Domain families : Pfam (Sanger)SAP (PF02037)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam02037    pfam00622   
Domain families : Smart (EMBL)SAP (SM00513)  SPRY (SM00449)  
Conserved Domain (NCBI)HNRNPUL2
DMDM Disease mutations221092
Blocks (Seattle)HNRNPUL2
SuperfamilyQ1KMD3
Human Protein Atlas [tissue]ENSG00000214753-HNRNPUL2 [tissue]
Peptide AtlasQ1KMD3
IPIIPI00456887   
Protein Interaction databases
DIP (DOE-UCLA)Q1KMD3
IntAct (EBI)Q1KMD3
FunCoupENSG00000214753
BioGRIDHNRNPUL2
STRING (EMBL)HNRNPUL2
ZODIACHNRNPUL2
Ontologies - Pathways
QuickGOQ1KMD3
Ontology : AmiGORNA binding  nucleus  nucleoplasm  biological_process  membrane  
Ontology : EGO-EBIRNA binding  nucleus  nucleoplasm  biological_process  membrane  
NDEx NetworkHNRNPUL2
Atlas of Cancer Signalling NetworkHNRNPUL2
Wikipedia pathwaysHNRNPUL2
Orthology - Evolution
OrthoDB221092
GeneTree (enSembl)ENSG00000214753
Phylogenetic Trees/Animal Genes : TreeFamHNRNPUL2
HOGENOMQ1KMD3
Homologs : HomoloGeneHNRNPUL2
Homology/Alignments : Family Browser (UCSC)HNRNPUL2
Gene fusions - Rearrangements
Fusion : MitelmanHNRNPUL2/AHNAK [11q12.3/11q12.3]  
Fusion : MitelmanHNRNPUL2/TTC9C [11q12.3/11q12.3]  [t(11;11)(q12;q12)]  
Fusion PortalHNRNPUL2 11q12.3 TTC9C 11q12.3 BRCA
Fusion Cancer (Beijing)BSCL2 [11q12.3]  -  HNRNPUL2 [11q12.3]  [FUSC000423]
Fusion Cancer (Beijing)HNRNPUL2 [11q12.3]  -  C11orf49 [11p11.2]  [FUSC001253]  [FUSC001253]  [FUSC001253]  [FUSC001253]
Fusion : QuiverHNRNPUL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPUL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPUL2
dbVarHNRNPUL2
ClinVarHNRNPUL2
1000_GenomesHNRNPUL2 
Exome Variant ServerHNRNPUL2
ExAC (Exome Aggregation Consortium)ENSG00000214753
GNOMAD BrowserENSG00000214753
Varsome BrowserHNRNPUL2
Genetic variants : HAPMAP221092
Genomic Variants (DGV)HNRNPUL2 [DGVbeta]
DECIPHERHNRNPUL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPUL2 
Mutations
ICGC Data PortalHNRNPUL2 
TCGA Data PortalHNRNPUL2 
Broad Tumor PortalHNRNPUL2
OASIS PortalHNRNPUL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPUL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPUL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPUL2
DgiDB (Drug Gene Interaction Database)HNRNPUL2
DoCM (Curated mutations)HNRNPUL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPUL2 (select a term)
intoGenHNRNPUL2
Cancer3DHNRNPUL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHNRNPUL2
MedgenHNRNPUL2
Genetic Testing Registry HNRNPUL2
NextProtQ1KMD3 [Medical]
TSGene221092
GENETestsHNRNPUL2
Target ValidationHNRNPUL2
Huge Navigator HNRNPUL2 [HugePedia]
snp3D : Map Gene to Disease221092
BioCentury BCIQHNRNPUL2
ClinGenHNRNPUL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221092
Chemical/Pharm GKB GenePA162391554
Clinical trialHNRNPUL2
Miscellaneous
canSAR (ICR)HNRNPUL2 (select the gene name)
DataMed IndexHNRNPUL2
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPUL2
EVEXHNRNPUL2
GoPubMedHNRNPUL2
iHOPHNRNPUL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 17 18:16:32 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.