Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HNRNPUL2 (heterogeneous nuclear ribonucleoprotein U like 2)

Identity

Alias (NCBI)HNRPUL2
SAF-A2
HGNC (Hugo) HNRNPUL2
HGNC Alias symbDKFZp762N1910
HGNC Previous nameHNRPUL2
HGNC Previous nameheterogeneous nuclear ribonucleoprotein U-like 2
LocusID (NCBI) 221092
Atlas_Id 54365
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62712630 and ends at 62727457 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BSCL2 (11q12.3) / HNRNPUL2 (11q12.3)DCTN2 (12q13.3) / HNRNPUL2 (11q12.3)HNRNPUL2 (11q12.3) / AHNAK (11q12.3)
HNRNPUL2 (11q12.3) / BSCL2 (11q12.3)HNRNPUL2 (11q12.3) / C11orf49 (11p11.2)HNRNPUL2 (11q12.3) / NR4A1 (12q13.13)
HNRNPUL2 (11q12.3) / NRSN2 (20p13)HNRNPUL2 (11q12.3) / TNFAIP1 (17q11.2)HNRNPUL2 (11q12.3) / TTC9C (11q12.3)
HNRNPUL2 (11q12.3) / YY1AP1 (1q22)KCNAB1 (3q25.31) / HNRNPUL2 (11q12.3)SIRPA (20p13) / HNRNPUL2 (11q12.3)
HNRNPUL2 11q12.3 / TTC9C 11q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)HNRNPUL2   25451
Cards
Entrez_Gene (NCBI)HNRNPUL2    heterogeneous nuclear ribonucleoprotein U like 2
AliasesHNRPUL2; SAF-A2
GeneCards (Weizmann)HNRNPUL2
Ensembl hg19 (Hinxton)ENSG00000214753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214753 [Gene_View]  ENSG00000214753 [Sequence]  chr11:62712630-62727457 [Contig_View]  HNRNPUL2 [Vega]
ICGC DataPortalENSG00000214753
TCGA cBioPortalHNRNPUL2
AceView (NCBI)HNRNPUL2
Genatlas (Paris)HNRNPUL2
SOURCE (Princeton)HNRNPUL2
Genetics Home Reference (NIH)HNRNPUL2
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPUL2  -     chr11:62712630-62727457 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPUL2  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathHNRNPUL2 - 11q12.3 [CytoView hg19]  HNRNPUL2 - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000214753
Genome Data Viewer NCBIHNRNPUL2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI992017 BC029105 BC032369 DQ470474
RefSeq transcript (Entrez)NM_001079559
Consensus coding sequences : CCDS (NCBI)HNRNPUL2
Gene ExpressionHNRNPUL2 [ NCBI-GEO ]   HNRNPUL2 [ EBI - ARRAY_EXPRESS ]   HNRNPUL2 [ SEEK ]   HNRNPUL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPUL2 [ Firebrowse - Broad ]
GenevisibleExpression of HNRNPUL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221092
GTEX Portal (Tissue expression)HNRNPUL2
Human Protein AtlasENSG00000214753-HNRNPUL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1KMD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1KMD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1KMD3
PhosPhoSitePlusQ1KMD3
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    SAP (PS50800)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    ConA-like_dom_sf    P-loop_NTPase    SAP_dom    SAP_dom_sf    SPRY_dom    SPRY_hnRNP_U   
Domain families : Pfam (Sanger)SAP (PF02037)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam02037    pfam00622   
Domain families : Smart (EMBL)SAP (SM00513)  SPRY (SM00449)  
Conserved Domain (NCBI)HNRNPUL2
SuperfamilyQ1KMD3
AlphaFold pdb e-kbQ1KMD3   
Human Protein Atlas [tissue]ENSG00000214753-HNRNPUL2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q1KMD3
IntAct (EBI)Q1KMD3
BioGRIDHNRNPUL2
STRING (EMBL)HNRNPUL2
ZODIACHNRNPUL2
Ontologies - Pathways
QuickGOQ1KMD3
Ontology : AmiGORNA binding  RNA binding  nucleus  nucleoplasm  nucleoplasm  biological_process  membrane  
Ontology : EGO-EBIRNA binding  RNA binding  nucleus  nucleoplasm  nucleoplasm  biological_process  membrane  
NDEx NetworkHNRNPUL2
Atlas of Cancer Signalling NetworkHNRNPUL2
Wikipedia pathwaysHNRNPUL2
Orthology - Evolution
OrthoDB221092
GeneTree (enSembl)ENSG00000214753
Phylogenetic Trees/Animal Genes : TreeFamHNRNPUL2
Homologs : HomoloGeneHNRNPUL2
Homology/Alignments : Family Browser (UCSC)HNRNPUL2
Gene fusions - Rearrangements
Fusion : MitelmanHNRNPUL2/AHNAK [11q12.3/11q12.3]  
Fusion : MitelmanHNRNPUL2/TTC9C [11q12.3/11q12.3]  
Fusion Cancer (Beijing)BSCL2 [11q12.3]  -  HNRNPUL2 [11q12.3]  [FUSC000423]
Fusion Cancer (Beijing)HNRNPUL2 [11q12.3]  -  C11orf49 [11p11.2]  [FUSC001253]  [FUSC001253]  [FUSC001253]  [FUSC001253]
Fusion : QuiverHNRNPUL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPUL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPUL2
dbVarHNRNPUL2
ClinVarHNRNPUL2
MonarchHNRNPUL2
1000_GenomesHNRNPUL2 
Exome Variant ServerHNRNPUL2
GNOMAD BrowserENSG00000214753
Varsome BrowserHNRNPUL2
ACMGHNRNPUL2 variants
VarityQ1KMD3
Genomic Variants (DGV)HNRNPUL2 [DGVbeta]
DECIPHERHNRNPUL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPUL2 
Mutations
ICGC Data PortalHNRNPUL2 
TCGA Data PortalHNRNPUL2 
Broad Tumor PortalHNRNPUL2
OASIS PortalHNRNPUL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPUL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHNRNPUL2
Mutations and Diseases : HGMDHNRNPUL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHNRNPUL2
DgiDB (Drug Gene Interaction Database)HNRNPUL2
DoCM (Curated mutations)HNRNPUL2
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPUL2
Cancer3DHNRNPUL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHNRNPUL2
MedgenHNRNPUL2
Genetic Testing Registry HNRNPUL2
NextProtQ1KMD3 [Medical]
GENETestsHNRNPUL2
Target ValidationHNRNPUL2
Huge Navigator HNRNPUL2 [HugePedia]
ClinGenHNRNPUL2
Clinical trials, drugs, therapy
MyCancerGenomeHNRNPUL2
Protein Interactions : CTDHNRNPUL2
Pharm GKB GenePA162391554
PharosQ1KMD3
Clinical trialHNRNPUL2
Miscellaneous
canSAR (ICR)HNRNPUL2
HarmonizomeHNRNPUL2
DataMed IndexHNRNPUL2
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHNRNPUL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:42 CEST 2021
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