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HOMER3 (homer scaffolding protein 3)

Identity

Alias_nameshomer homolog 3 (Drosophila)
Alias_symbol (synonym)HOMER-3
Other aliasVESL3
HGNC (Hugo) HOMER3
LocusID (NCBI) 9454
Atlas_Id 53566
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18929201 and ends at 18940352 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GYS1 (19q13.33) / HOMER3 (19p13.11)HOMER3 (19p13.11) / HOMER3 (19p13.11)GYS1 19q13.33 / HOMER3 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOMER3   17514
Cards
Entrez_Gene (NCBI)HOMER3  9454  homer scaffolding protein 3
AliasesHOMER-3; VESL3
GeneCards (Weizmann)HOMER3
Ensembl hg19 (Hinxton)ENSG00000051128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000051128 [Gene_View]  chr19:18929201-18940352 [Contig_View]  HOMER3 [Vega]
ICGC DataPortalENSG00000051128
TCGA cBioPortalHOMER3
AceView (NCBI)HOMER3
Genatlas (Paris)HOMER3
WikiGenes9454
SOURCE (Princeton)HOMER3
Genetics Home Reference (NIH)HOMER3
Genomic and cartography
GoldenPath hg38 (UCSC)HOMER3  -     chr19:18929201-18940352 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOMER3  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblHOMER3 - 19p13.11 [CytoView hg19]  HOMER3 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIHOMER3 [Mapview hg19]  HOMER3 [Mapview hg38]
OMIM604800   
Gene and transcription
Genbank (Entrez)AF093265 AK124450 AK313995 AL529052 AW606967
RefSeq transcript (Entrez)NM_001145721 NM_001145722 NM_001145724 NM_004838
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOMER3
Cluster EST : UnigeneHs.720208 [ NCBI ]
CGAP (NCI)Hs.720208
Alternative Splicing GalleryENSG00000051128
Gene ExpressionHOMER3 [ NCBI-GEO ]   HOMER3 [ EBI - ARRAY_EXPRESS ]   HOMER3 [ SEEK ]   HOMER3 [ MEM ]
Gene Expression Viewer (FireBrowse)HOMER3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9454
GTEX Portal (Tissue expression)HOMER3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSC5
Splice isoforms : SwissVarQ9NSC5
PhosPhoSitePlusQ9NSC5
Domaine pattern : Prosite (Expaxy)WH1 (PS50229)   
Domains : Interpro (EBI)PH_dom-like    WH1/EVH1_dom   
Domain families : Pfam (Sanger)WH1 (PF00568)   
Domain families : Pfam (NCBI)pfam00568   
Domain families : Smart (EMBL)WH1 (SM00461)  
Conserved Domain (NCBI)HOMER3
DMDM Disease mutations9454
Blocks (Seattle)HOMER3
PDB (SRS)2P8V    3CVF   
PDB (PDBSum)2P8V    3CVF   
PDB (IMB)2P8V    3CVF   
PDB (RSDB)2P8V    3CVF   
Structural Biology KnowledgeBase2P8V    3CVF   
SCOP (Structural Classification of Proteins)2P8V    3CVF   
CATH (Classification of proteins structures)2P8V    3CVF   
SuperfamilyQ9NSC5
Human Protein AtlasENSG00000051128
Peptide AtlasQ9NSC5
HPRD07270
IPIIPI00395002   IPI00395003   IPI00396543   IPI00395005   IPI00160395   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSC5
IntAct (EBI)Q9NSC5
FunCoupENSG00000051128
BioGRIDHOMER3
STRING (EMBL)HOMER3
ZODIACHOMER3
Ontologies - Pathways
QuickGOQ9NSC5
Ontology : AmiGOprotein binding  cellular_component  cytosol  protein targeting  G-protein coupled glutamate receptor signaling pathway  protein C-terminus binding  postsynaptic density  protein domain specific binding  cell junction  basal part of cell  postsynaptic membrane  
Ontology : EGO-EBIprotein binding  cellular_component  cytosol  protein targeting  G-protein coupled glutamate receptor signaling pathway  protein C-terminus binding  postsynaptic density  protein domain specific binding  cell junction  basal part of cell  postsynaptic membrane  
Pathways : KEGGFoxO signaling pathway    Glutamatergic synapse   
NDEx NetworkHOMER3
Atlas of Cancer Signalling NetworkHOMER3
Wikipedia pathwaysHOMER3
Orthology - Evolution
OrthoDB9454
GeneTree (enSembl)ENSG00000051128
Phylogenetic Trees/Animal Genes : TreeFamHOMER3
HOVERGENQ9NSC5
HOGENOMQ9NSC5
Homologs : HomoloGeneHOMER3
Homology/Alignments : Family Browser (UCSC)HOMER3
Gene fusions - Rearrangements
Fusion : MitelmanGYS1/HOMER3 [19q13.33/19p13.11]  [t(19;19)(p13;q13)]  
Fusion: TCGAGYS1 19q13.33 HOMER3 19p13.11 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOMER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOMER3
dbVarHOMER3
ClinVarHOMER3
1000_GenomesHOMER3 
Exome Variant ServerHOMER3
ExAC (Exome Aggregation Consortium)HOMER3 (select the gene name)
Genetic variants : HAPMAP9454
Genomic Variants (DGV)HOMER3 [DGVbeta]
DECIPHERHOMER3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOMER3 
Mutations
ICGC Data PortalHOMER3 
TCGA Data PortalHOMER3 
Broad Tumor PortalHOMER3
OASIS PortalHOMER3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOMER3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOMER3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOMER3
DgiDB (Drug Gene Interaction Database)HOMER3
DoCM (Curated mutations)HOMER3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOMER3 (select a term)
intoGenHOMER3
Cancer3DHOMER3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604800   
Orphanet
MedgenHOMER3
Genetic Testing Registry HOMER3
NextProtQ9NSC5 [Medical]
TSGene9454
GENETestsHOMER3
Target ValidationHOMER3
Huge Navigator HOMER3 [HugePedia]
snp3D : Map Gene to Disease9454
BioCentury BCIQHOMER3
ClinGenHOMER3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9454
Chemical/Pharm GKB GenePA134988320
Clinical trialHOMER3
Miscellaneous
canSAR (ICR)HOMER3 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOMER3
EVEXHOMER3
GoPubMedHOMER3
iHOPHOMER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:37:14 CEST 2017

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