HOPX (HOP homeobox)

Identity

Other names	Cameo
	HOP
	LAGY
	MGC20820
	NECC1
	OB1
	SMAP31
	Toto
Hugo	-
Location	4q11-q12
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
Hugo	-
GDB	HOPX
Entrez_Gene	HOPX  84525  HOP homeobox
	Cards
GeneCards	HOPX
Ensembl	HOPX [Search_View]   ENSG00000171476 [Gene_View]
Genatlas	HOPX
GeneLynx	HOPX
eGenome	HOPX
euGene	84525
	Genomic and cartography
GoldenPath	HOPX  -     chr4:57208922-57217408 -  4q12   [Description]    (hg18-March_2006)
Ensembl	HOPX - 4q12 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	HOPX
	Gene and transcription
Genbank	AB019573 [ ENTREZ ]
Genbank	AB059408 [ ENTREZ ]
Genbank	AB059409 [ ENTREZ ]
Genbank	AB059410 [ ENTREZ ]
Genbank	AF454763 [ ENTREZ ]
RefSeq	NM_032495 [ SRS ]    NM_032495 [ ENTREZ ]
RefSeq	NM_139211 [ SRS ]    NM_139211 [ ENTREZ ]
RefSeq	NM_139212 [ SRS ]    NM_139212 [ ENTREZ ]
RefSeq	NC_000004 [ SRS ]    NC_000004 [ ENTREZ ]
RefSeq	NT_022853 [ SRS ]    NT_022853 [ ENTREZ ]
AceView	HOPX AceView - NCBI
Unigene	Hs.654864 [ SRS ]    Hs.654864 [ NCBI ]     HS654864 [ spliceNest ]
Fast-db	4645 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9BPY8 [ SRS]    Q9BPY8 [ EXPASY ]     Q9BPY8 [ INTERPRO ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
CluSTr	Q9BPY8
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	Q9BPY8 HOP_HUMAN [ Domain structure ]   Q9BPY8 HOP_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q9BPY8
HPRD	06280
	Protein Interaction databases
DIP	Q9BPY8
IntAct	Q9BPY8
	Polymorphism : SNP, mutations, diseases
OMIM	607275    [ map ]
GENECLINICS	607275
SNP	HOPX [dbSNP-NCBI]
SNP	NM_032495 [SNP-NCI]
SNP	NM_139211 [SNP-NCI]
SNP	NM_139212 [SNP-NCI]
SNP	HOPX [GeneSNPs - Utah]  HOPX] [HGBASE - SRS]
HAPMAP	HOPX [HAPMAP]
HGMD	-
	General knowledge
Family Browser	HOPX [UCSC Family Browser]
SOURCE	NM_032495
SOURCE	NM_139211
SOURCE	NM_139212
SMD	Hs.654864
SAGE	Hs.654864
GO	negative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GO	transcription factor activity [Amigo]  transcription factor activity
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	heart development [Amigo]  heart development
GO	transcription repressor activity [Amigo]  transcription repressor activity
GO	positive regulation of skeletal muscle regeneration [Amigo]  positive regulation of skeletal muscle regeneration
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	positive regulation of striated muscle cell differentiation [Amigo]  positive regulation of striated muscle cell differentiation
BIOCARTA	Hop Pathway in Cardiac Development    [Genes]
PubGene	HOPX
TreeFam	-
CTD	84525 [Comparative Genomics Database]
	Other databases
	Probes
Probe	- Related clones (RZPD - Berlin)
	PubMed
PubMed	20 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu May 22 20:10:41 2008