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HORMAD1 (HORMA domain containing 1)

Identity

Alias (NCBI)CT46
NOHMA
HGNC (Hugo) HORMAD1
HGNC Alias symbDKFZP434A1315
CT46
HGNC Alias namecancer/testis antigen 46
LocusID (NCBI) 84072
Atlas_Id 53261
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 150698060 and ends at 150720895 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GOLPH3L (1q21.3) / HORMAD1 (1q21.3)UBXN2A (2p23.3) / HORMAD1 (1q21.3)XPO1 (2p15) / HORMAD1 (1q21.3)
GOLPH3L 1q21.3 / HORMAD1 1q21.3XPO1 2p15 / HORMAD1 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HORMAD1   25245
Cards
Entrez_Gene (NCBI)HORMAD1    HORMA domain containing 1
AliasesCT46; NOHMA
GeneCards (Weizmann)HORMAD1
Ensembl hg19 (Hinxton)ENSG00000143452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143452 [Gene_View]  ENSG00000143452 [Sequence]  chr1:150698060-150720895 [Contig_View]  HORMAD1 [Vega]
ICGC DataPortalENSG00000143452
TCGA cBioPortalHORMAD1
AceView (NCBI)HORMAD1
Genatlas (Paris)HORMAD1
SOURCE (Princeton)HORMAD1
Genetics Home Reference (NIH)HORMAD1
Genomic and cartography
GoldenPath hg38 (UCSC)HORMAD1  -     chr1:150698060-150720895 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HORMAD1  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathHORMAD1 - 1q21.3 [CytoView hg19]  HORMAD1 - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000143452
Genome Data Viewer NCBIHORMAD1 [Mapview hg19]  
OMIM609824   
Gene and transcription
Genbank (Entrez)AA991355 AK097390 AK098633 AL136755 AY626344
RefSeq transcript (Entrez)NM_001199829 NM_032132
Consensus coding sequences : CCDS (NCBI)HORMAD1
Gene ExpressionHORMAD1 [ NCBI-GEO ]   HORMAD1 [ EBI - ARRAY_EXPRESS ]   HORMAD1 [ SEEK ]   HORMAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)HORMAD1 [ Firebrowse - Broad ]
GenevisibleExpression of HORMAD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84072
GTEX Portal (Tissue expression)HORMAD1
Human Protein AtlasENSG00000143452-HORMAD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X24
PhosPhoSitePlusQ86X24
Domaine pattern : Prosite (Expaxy)HORMA (PS50815)   
Domains : Interpro (EBI)HORMA_dom    HORMA_dom_sf   
Domain families : Pfam (Sanger)HORMA (PF02301)   
Domain families : Pfam (NCBI)pfam02301   
Conserved Domain (NCBI)HORMAD1
SuperfamilyQ86X24
AlphaFold pdb e-kbQ86X24   
Human Protein Atlas [tissue]ENSG00000143452-HORMAD1 [tissue]
HPRD11396
Protein Interaction databases
DIP (DOE-UCLA)Q86X24
IntAct (EBI)Q86X24
BioGRIDHORMAD1
STRING (EMBL)HORMAD1
ZODIACHORMAD1
Ontologies - Pathways
QuickGOQ86X24
Ontology : AmiGOsynaptonemal complex  blastocyst development  protein binding  nucleus  nucleus  chromosome  synaptonemal complex assembly  synaptonemal complex assembly  spermatogenesis  meiotic DNA double-strand break formation  oogenesis  meiotic sister chromatid cohesion  meiotic cell cycle  meiotic recombination checkpoint signaling  meiotic recombination checkpoint signaling  regulation of homologous chromosome segregation  
Ontology : EGO-EBIsynaptonemal complex  blastocyst development  protein binding  nucleus  nucleus  chromosome  synaptonemal complex assembly  synaptonemal complex assembly  spermatogenesis  meiotic DNA double-strand break formation  oogenesis  meiotic sister chromatid cohesion  meiotic cell cycle  meiotic recombination checkpoint signaling  meiotic recombination checkpoint signaling  regulation of homologous chromosome segregation  
NDEx NetworkHORMAD1
Atlas of Cancer Signalling NetworkHORMAD1
Wikipedia pathwaysHORMAD1
Orthology - Evolution
OrthoDB84072
GeneTree (enSembl)ENSG00000143452
Phylogenetic Trees/Animal Genes : TreeFamHORMAD1
Homologs : HomoloGeneHORMAD1
Homology/Alignments : Family Browser (UCSC)HORMAD1
Gene fusions - Rearrangements
Fusion : MitelmanGOLPH3L/HORMAD1 [1q21.3/1q21.3]  
Fusion : MitelmanXPO1/HORMAD1 [2p15/1q21.3]  
Fusion : QuiverHORMAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHORMAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HORMAD1
dbVarHORMAD1
ClinVarHORMAD1
MonarchHORMAD1
1000_GenomesHORMAD1 
Exome Variant ServerHORMAD1
GNOMAD BrowserENSG00000143452
Varsome BrowserHORMAD1
ACMGHORMAD1 variants
VarityQ86X24
Genomic Variants (DGV)HORMAD1 [DGVbeta]
DECIPHERHORMAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHORMAD1 
Mutations
ICGC Data PortalHORMAD1 
TCGA Data PortalHORMAD1 
Broad Tumor PortalHORMAD1
OASIS PortalHORMAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHORMAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHORMAD1
Mutations and Diseases : HGMDHORMAD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHORMAD1
DgiDB (Drug Gene Interaction Database)HORMAD1
DoCM (Curated mutations)HORMAD1
CIViC (Clinical Interpretations of Variants in Cancer)HORMAD1
Cancer3DHORMAD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609824   
Orphanet
DisGeNETHORMAD1
MedgenHORMAD1
Genetic Testing Registry HORMAD1
NextProtQ86X24 [Medical]
GENETestsHORMAD1
Target ValidationHORMAD1
Huge Navigator HORMAD1 [HugePedia]
ClinGenHORMAD1
Clinical trials, drugs, therapy
MyCancerGenomeHORMAD1
Protein Interactions : CTDHORMAD1
Pharm GKB GenePA134930374
PharosQ86X24
Clinical trialHORMAD1
Miscellaneous
canSAR (ICR)HORMAD1
HarmonizomeHORMAD1
DataMed IndexHORMAD1
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHORMAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:44 CEST 2021

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