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HORMAD1 (HORMA domain containing 1)

Identity

Alias_symbol (synonym)DKFZP434A1315
CT46
Other aliasNOHMA
HGNC (Hugo) HORMAD1
LocusID (NCBI) 84072
Atlas_Id 53261
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 150670535 and ends at 150693364 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GOLPH3L (1q21.3) / HORMAD1 (1q21.3)UBXN2A (2p23.3) / HORMAD1 (1q21.3)XPO1 (2p15) / HORMAD1 (1q21.3)
GOLPH3L 1q21.3 / HORMAD1 1q21.3XPO1 2p15 / HORMAD1 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HORMAD1   25245
Cards
Entrez_Gene (NCBI)HORMAD1  84072  HORMA domain containing 1
AliasesCT46; NOHMA
GeneCards (Weizmann)HORMAD1
Ensembl hg19 (Hinxton)ENSG00000143452 [Gene_View]  chr1:150670535-150693364 [Contig_View]  HORMAD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143452 [Gene_View]  chr1:150670535-150693364 [Contig_View]  HORMAD1 [Vega]
ICGC DataPortalENSG00000143452
TCGA cBioPortalHORMAD1
AceView (NCBI)HORMAD1
Genatlas (Paris)HORMAD1
WikiGenes84072
SOURCE (Princeton)HORMAD1
Genetics Home Reference (NIH)HORMAD1
Genomic and cartography
GoldenPath hg19 (UCSC)HORMAD1  -     chr1:150670535-150693364 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HORMAD1  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblHORMAD1 - 1q21.3 [CytoView hg19]  HORMAD1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIHORMAD1 [Mapview hg19]  HORMAD1 [Mapview hg38]
OMIM609824   
Gene and transcription
Genbank (Entrez)AA991355 AK097390 AK098633 AL136755 AM392561
RefSeq transcript (Entrez)NM_001199829 NM_032132
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)HORMAD1
Cluster EST : UnigeneHs.298312 [ NCBI ]
CGAP (NCI)Hs.298312
Alternative Splicing GalleryENSG00000143452
Gene ExpressionHORMAD1 [ NCBI-GEO ]   HORMAD1 [ EBI - ARRAY_EXPRESS ]   HORMAD1 [ SEEK ]   HORMAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)HORMAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84072
GTEX Portal (Tissue expression)HORMAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X24
Splice isoforms : SwissVarQ86X24
PhosPhoSitePlusQ86X24
Domaine pattern : Prosite (Expaxy)HORMA (PS50815)   
Domains : Interpro (EBI)HORMA_dom   
Domain families : Pfam (Sanger)HORMA (PF02301)   
Domain families : Pfam (NCBI)pfam02301   
Conserved Domain (NCBI)HORMAD1
DMDM Disease mutations84072
Blocks (Seattle)HORMAD1
SuperfamilyQ86X24
Human Protein AtlasENSG00000143452
Peptide AtlasQ86X24
HPRD11396
IPIIPI00640365   IPI00646171   IPI00643705   IPI00329515   IPI00643187   IPI00854823   
Protein Interaction databases
DIP (DOE-UCLA)Q86X24
IntAct (EBI)Q86X24
FunCoupENSG00000143452
BioGRIDHORMAD1
STRING (EMBL)HORMAD1
ZODIACHORMAD1
Ontologies - Pathways
QuickGOQ86X24
Ontology : AmiGOsynaptonemal complex  blastocyst development  nucleus  chromosome  cytoplasm  meiotic nuclear division  synaptonemal complex assembly  spermatogenesis  meiotic DNA double-strand break formation  oogenesis  meiotic sister chromatid cohesion  meiotic recombination checkpoint  regulation of homologous chromosome segregation  
Ontology : EGO-EBIsynaptonemal complex  blastocyst development  nucleus  chromosome  cytoplasm  meiotic nuclear division  synaptonemal complex assembly  spermatogenesis  meiotic DNA double-strand break formation  oogenesis  meiotic sister chromatid cohesion  meiotic recombination checkpoint  regulation of homologous chromosome segregation  
NDEx NetworkHORMAD1
Atlas of Cancer Signalling NetworkHORMAD1
Wikipedia pathwaysHORMAD1
Orthology - Evolution
OrthoDB84072
GeneTree (enSembl)ENSG00000143452
Phylogenetic Trees/Animal Genes : TreeFamHORMAD1
HOVERGENQ86X24
HOGENOMQ86X24
Homologs : HomoloGeneHORMAD1
Homology/Alignments : Family Browser (UCSC)HORMAD1
Gene fusions - Rearrangements
Fusion : MitelmanGOLPH3L/HORMAD1 [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion : MitelmanXPO1/HORMAD1 [2p15/1q21.3]  [t(1;2)(q21;p15)]  
Fusion: TCGAGOLPH3L 1q21.3 HORMAD1 1q21.3 OV
Fusion: TCGAXPO1 2p15 HORMAD1 1q21.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHORMAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HORMAD1
dbVarHORMAD1
ClinVarHORMAD1
1000_GenomesHORMAD1 
Exome Variant ServerHORMAD1
ExAC (Exome Aggregation Consortium)HORMAD1 (select the gene name)
Genetic variants : HAPMAP84072
Genomic Variants (DGV)HORMAD1 [DGVbeta]
DECIPHER (Syndromes)1:150670535-150693364  ENSG00000143452
CONAN: Copy Number AnalysisHORMAD1 
Mutations
ICGC Data PortalHORMAD1 
TCGA Data PortalHORMAD1 
Broad Tumor PortalHORMAD1
OASIS PortalHORMAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHORMAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHORMAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HORMAD1
DgiDB (Drug Gene Interaction Database)HORMAD1
DoCM (Curated mutations)HORMAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HORMAD1 (select a term)
intoGenHORMAD1
Cancer3DHORMAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609824   
Orphanet
MedgenHORMAD1
Genetic Testing Registry HORMAD1
NextProtQ86X24 [Medical]
TSGene84072
GENETestsHORMAD1
Huge Navigator HORMAD1 [HugePedia]
snp3D : Map Gene to Disease84072
BioCentury BCIQHORMAD1
ClinGenHORMAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84072
Chemical/Pharm GKB GenePA134930374
Clinical trialHORMAD1
Miscellaneous
canSAR (ICR)HORMAD1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHORMAD1
EVEXHORMAD1
GoPubMedHORMAD1
iHOPHORMAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:06 CEST 2017

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