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HORMAD2 (HORMA domain containing 2)

Identity

Alias_symbol (synonym)MGC26710
CT46.2
Other alias
HGNC (Hugo) HORMAD2
LocusID (NCBI) 150280
Atlas_Id 53337
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30476453 and ends at 30573062 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HORMAD2   28383
Cards
Entrez_Gene (NCBI)HORMAD2  150280  HORMA domain containing 2
AliasesCT46.2
GeneCards (Weizmann)HORMAD2
Ensembl hg19 (Hinxton)ENSG00000176635 [Gene_View]  chr22:30476453-30573062 [Contig_View]  HORMAD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176635 [Gene_View]  chr22:30476453-30573062 [Contig_View]  HORMAD2 [Vega]
ICGC DataPortalENSG00000176635
TCGA cBioPortalHORMAD2
AceView (NCBI)HORMAD2
Genatlas (Paris)HORMAD2
WikiGenes150280
SOURCE (Princeton)HORMAD2
Genetics Home Reference (NIH)HORMAD2
Genomic and cartography
GoldenPath hg19 (UCSC)HORMAD2  -     chr22:30476453-30573062 +  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HORMAD2  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblHORMAD2 - 22q12.2 [CytoView hg19]  HORMAD2 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIHORMAD2 [Mapview hg19]  HORMAD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098703 BC030013 CR456341 CU013052 CU013340
RefSeq transcript (Entrez)NM_152510
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)HORMAD2
Cluster EST : UnigeneHs.120391 [ NCBI ]
CGAP (NCI)Hs.120391
Alternative Splicing GalleryENSG00000176635
Gene ExpressionHORMAD2 [ NCBI-GEO ]   HORMAD2 [ EBI - ARRAY_EXPRESS ]   HORMAD2 [ SEEK ]   HORMAD2 [ MEM ]
Gene Expression Viewer (FireBrowse)HORMAD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150280
GTEX Portal (Tissue expression)HORMAD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7B1
Splice isoforms : SwissVarQ8N7B1
PhosPhoSitePlusQ8N7B1
Domaine pattern : Prosite (Expaxy)HORMA (PS50815)   
Domains : Interpro (EBI)HORMA_dom   
Domain families : Pfam (Sanger)HORMA (PF02301)   
Domain families : Pfam (NCBI)pfam02301   
Conserved Domain (NCBI)HORMAD2
DMDM Disease mutations150280
Blocks (Seattle)HORMAD2
SuperfamilyQ8N7B1
Human Protein AtlasENSG00000176635
Peptide AtlasQ8N7B1
HPRD13668
IPIIPI00297680   IPI00879982   IPI00917097   IPI00917819   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7B1
IntAct (EBI)Q8N7B1
FunCoupENSG00000176635
BioGRIDHORMAD2
STRING (EMBL)HORMAD2
ZODIACHORMAD2
Ontologies - Pathways
QuickGOQ8N7B1
Ontology : AmiGOsynaptonemal complex  nucleus  chromosome  meiotic nuclear division  meiotic sister chromatid cohesion  
Ontology : EGO-EBIsynaptonemal complex  nucleus  chromosome  meiotic nuclear division  meiotic sister chromatid cohesion  
NDEx NetworkHORMAD2
Atlas of Cancer Signalling NetworkHORMAD2
Wikipedia pathwaysHORMAD2
Orthology - Evolution
OrthoDB150280
GeneTree (enSembl)ENSG00000176635
Phylogenetic Trees/Animal Genes : TreeFamHORMAD2
HOVERGENQ8N7B1
HOGENOMQ8N7B1
Homologs : HomoloGeneHORMAD2
Homology/Alignments : Family Browser (UCSC)HORMAD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHORMAD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HORMAD2
dbVarHORMAD2
ClinVarHORMAD2
1000_GenomesHORMAD2 
Exome Variant ServerHORMAD2
ExAC (Exome Aggregation Consortium)HORMAD2 (select the gene name)
Genetic variants : HAPMAP150280
Genomic Variants (DGV)HORMAD2 [DGVbeta]
DECIPHER (Syndromes)22:30476453-30573062  ENSG00000176635
CONAN: Copy Number AnalysisHORMAD2 
Mutations
ICGC Data PortalHORMAD2 
TCGA Data PortalHORMAD2 
Broad Tumor PortalHORMAD2
OASIS PortalHORMAD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHORMAD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHORMAD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HORMAD2
DgiDB (Drug Gene Interaction Database)HORMAD2
DoCM (Curated mutations)HORMAD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HORMAD2 (select a term)
intoGenHORMAD2
Cancer3DHORMAD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHORMAD2
Genetic Testing Registry HORMAD2
NextProtQ8N7B1 [Medical]
TSGene150280
GENETestsHORMAD2
Huge Navigator HORMAD2 [HugePedia]
snp3D : Map Gene to Disease150280
BioCentury BCIQHORMAD2
ClinGenHORMAD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150280
Chemical/Pharm GKB GenePA134889862
Clinical trialHORMAD2
Miscellaneous
canSAR (ICR)HORMAD2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHORMAD2
EVEXHORMAD2
GoPubMedHORMAD2
iHOPHORMAD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:30 CET 2017

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