Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HOTAIR (HOX transcript antisense RNA)

Identity

Alias_namesHOX transcript antisense RNA (non-protein coding)
Alias_symbol (synonym)HOXC-AS4
HOXC11-AS1
NCRNA00072
Other aliasHOXAS
HGNC (Hugo) HOTAIR
LocusID (NCBI) 100124700
Atlas_Id 51537
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 54356092 and ends at 54362540 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOTAIR   33510
Cards
Entrez_Gene (NCBI)HOTAIR  100124700  HOX transcript antisense RNA
AliasesHOXAS; HOXC-AS4; HOXC11-AS1; NCRNA00072
GeneCards (Weizmann)HOTAIR
Ensembl hg19 (Hinxton)ENSG00000228630 [Gene_View]  chr12:54356092-54362540 [Contig_View]  HOTAIR [Vega]
Ensembl hg38 (Hinxton)ENSG00000228630 [Gene_View]  chr12:54356092-54362540 [Contig_View]  HOTAIR [Vega]
ICGC DataPortalENSG00000228630
TCGA cBioPortalHOTAIR
AceView (NCBI)HOTAIR
Genatlas (Paris)HOTAIR
WikiGenes100124700
SOURCE (Princeton)HOTAIR
Genetics Home Reference (NIH)HOTAIR
Genomic and cartography
GoldenPath hg19 (UCSC)HOTAIR  -     chr12:54356092-54362540 -  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOTAIR  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblHOTAIR - 12q13.13 [CytoView hg19]  HOTAIR - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOTAIR [Mapview hg19]  HOTAIR [Mapview hg38]
OMIM611400   
Gene and transcription
Genbank (Entrez)AA399272 AK123741 BF109906 DA567507 DA905601
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)HOTAIR
Cluster EST : UnigeneHs.197076 [ NCBI ]
CGAP (NCI)Hs.197076
Alternative Splicing GalleryENSG00000228630
Gene ExpressionHOTAIR [ NCBI-GEO ]   HOTAIR [ EBI - ARRAY_EXPRESS ]   HOTAIR [ SEEK ]   HOTAIR [ MEM ]
Gene Expression Viewer (FireBrowse)HOTAIR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100124700
GTEX Portal (Tissue expression)HOTAIR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOTAIR
DMDM Disease mutations100124700
Blocks (Seattle)HOTAIR
Human Protein AtlasENSG00000228630
Protein Interaction databases
FunCoupENSG00000228630
BioGRIDHOTAIR
STRING (EMBL)HOTAIR
ZODIACHOTAIR
Ontologies - Pathways
Huge Navigator HOTAIR [HugePedia]
snp3D : Map Gene to Disease100124700
BioCentury BCIQHOTAIR
ClinGenHOTAIR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100124700
Chemical/Pharm GKB GenePA162391575
Clinical trialHOTAIR
Miscellaneous
canSAR (ICR)HOTAIR (select the gene name)
Probes
Litterature
PubMed108 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOTAIR
EVEXHOTAIR
GoPubMedHOTAIR
iHOPHOTAIR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:30 CET 2017

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