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HOTAIRM1 (HOXA transcript antisense RNA, myeloid-specific 1)

Identity

Alias_nameshox transcript antisense RNA, myeloid-specific 1 (non-protein coding)
HOXA transcript antisense RNA, myeloid-specific 1 (non-protein coding)
Alias_symbol (synonym)HOXA-AS1
NCRNA00179
HOXA1-AS1
Other alias
HGNC (Hugo) HOTAIRM1
LocusID (NCBI) 100506311
Atlas_Id 55874
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27096094 and ends at 27100258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOTAIRM1 (7p15.2) / AP2A2 (11p15.5)HOTAIRM1 (7p15.2) / RANBP3 (19p13.3)HOTAIRM1 (7p15.2) / RNF10 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOTAIRM1   37117
Cards
Entrez_Gene (NCBI)HOTAIRM1  100506311  HOXA transcript antisense RNA, myeloid-specific 1
AliasesHOXA-AS1; HOXA1-AS1; NCRNA00179
GeneCards (Weizmann)HOTAIRM1
Ensembl hg19 (Hinxton)ENSG00000233429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233429 [Gene_View]  chr7:27096094-27100258 [Contig_View]  HOTAIRM1 [Vega]
ICGC DataPortalENSG00000233429
TCGA cBioPortalHOTAIRM1
AceView (NCBI)HOTAIRM1
Genatlas (Paris)HOTAIRM1
WikiGenes100506311
SOURCE (Princeton)HOTAIRM1
Genetics Home Reference (NIH)HOTAIRM1
Genomic and cartography
GoldenPath hg38 (UCSC)HOTAIRM1  -     chr7:27096094-27100258 +  7p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOTAIRM1  -     7p15.2   [Description]    (hg19-Feb_2009)
EnsemblHOTAIRM1 - 7p15.2 [CytoView hg19]  HOTAIRM1 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOTAIRM1 [Mapview hg19]  HOTAIRM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI123748 BC031342 GQ479958 HG975399
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOTAIRM1
Cluster EST : UnigeneHs.445239 [ NCBI ]
CGAP (NCI)Hs.445239
Alternative Splicing GalleryENSG00000233429
Gene ExpressionHOTAIRM1 [ NCBI-GEO ]   HOTAIRM1 [ EBI - ARRAY_EXPRESS ]   HOTAIRM1 [ SEEK ]   HOTAIRM1 [ MEM ]
Gene Expression Viewer (FireBrowse)HOTAIRM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506311
GTEX Portal (Tissue expression)HOTAIRM1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOTAIRM1
DMDM Disease mutations100506311
Blocks (Seattle)HOTAIRM1
Human Protein AtlasENSG00000233429
Protein Interaction databases
FunCoupENSG00000233429
BioGRIDHOTAIRM1
STRING (EMBL)HOTAIRM1
ZODIACHOTAIRM1
Ontologies - Pathways
Huge Navigator HOTAIRM1 [HugePedia]
snp3D : Map Gene to Disease100506311
BioCentury BCIQHOTAIRM1
ClinGenHOTAIRM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506311
Chemical/Pharm GKB GenePA165618126
Clinical trialHOTAIRM1
Miscellaneous
canSAR (ICR)HOTAIRM1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOTAIRM1
EVEXHOTAIRM1
GoPubMedHOTAIRM1
iHOPHOTAIRM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:37:16 CEST 2017

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