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HOXA-AS2 (HOXA cluster antisense RNA 2)

Identity

Other aliasHOXA3as
HGNC (Hugo) HOXA-AS2
LocusID (NCBI) 285943
Atlas_Id 56868
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27121919 and ends at 27128760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXA-AS2   43745
Cards
Entrez_Gene (NCBI)HOXA-AS2  285943  HOXA cluster antisense RNA 2
AliasesHOXA3as
GeneCards (Weizmann)HOXA-AS2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:27121919-27128760 [Contig_View]  HOXA-AS2 [Vega]
TCGA cBioPortalHOXA-AS2
AceView (NCBI)HOXA-AS2
Genatlas (Paris)HOXA-AS2
WikiGenes285943
SOURCE (Princeton)HOXA-AS2
Genetics Home Reference (NIH)HOXA-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)HOXA-AS2  -     chr7:27121919-27128760 +  7p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXA-AS2  -     7p15.2   [Description]    (hg19-Feb_2009)
EnsemblHOXA-AS2 - 7p15.2 [CytoView hg19]  HOXA-AS2 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA-AS2 [Mapview hg19]  HOXA-AS2 [Mapview hg38]
OMIM616068   
Gene and transcription
Genbank (Entrez)AK056230 AK311383 BC035889 BE873349 BG248392
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXA-AS2
Cluster EST : UnigeneHs.721126 [ NCBI ]
CGAP (NCI)Hs.721126
Gene ExpressionHOXA-AS2 [ NCBI-GEO ]   HOXA-AS2 [ EBI - ARRAY_EXPRESS ]   HOXA-AS2 [ SEEK ]   HOXA-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285943
GTEX Portal (Tissue expression)HOXA-AS2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOXA-AS2
DMDM Disease mutations285943
Blocks (Seattle)HOXA-AS2
Protein Interaction databases
BioGRIDHOXA-AS2
STRING (EMBL)HOXA-AS2
ZODIACHOXA-AS2
Ontologies - Pathways
Huge Navigator HOXA-AS2 [HugePedia]
snp3D : Map Gene to Disease285943
BioCentury BCIQHOXA-AS2
ClinGenHOXA-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285943
Clinical trialHOXA-AS2
Miscellaneous
canSAR (ICR)HOXA-AS2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA-AS2
EVEXHOXA-AS2
GoPubMedHOXA-AS2
iHOPHOXA-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:16:38 CET 2017

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