Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HOXA-AS3 (HOXA cluster antisense RNA 3)

Identity

Alias_namesHOXA cluster antisense RNA 3 (non-protein coding)
Alias_symbol (synonym)HOXA6as
Other alias
HGNC (Hugo) HOXA-AS3
LocusID (NCBI) 100133311
Atlas_Id 64390
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27186782 and ends at 27195547 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXA-AS3   43748
Cards
Entrez_Gene (NCBI)HOXA-AS3  100133311  HOXA cluster antisense RNA 3
AliasesHOXA6as
GeneCards (Weizmann)HOXA-AS3
Ensembl hg19 (Hinxton)ENSG00000254369 [Gene_View]  chr7:27186782-27195547 [Contig_View]  HOXA-AS3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000254369 [Gene_View]  chr7:27186782-27195547 [Contig_View]  HOXA-AS3 [Vega]
ICGC DataPortalENSG00000254369
TCGA cBioPortalHOXA-AS3
AceView (NCBI)HOXA-AS3
Genatlas (Paris)HOXA-AS3
WikiGenes100133311
SOURCE (Princeton)HOXA-AS3
Genetics Home Reference (NIH)HOXA-AS3
Genomic and cartography
GoldenPath hg19 (UCSC)HOXA-AS3  -     chr7:27186782-27195547 +  7p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXA-AS3  -     7p15.2   [Description]    (hg38-Dec_2013)
EnsemblHOXA-AS3 - 7p15.2 [CytoView hg19]  HOXA-AS3 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA-AS3 [Mapview hg19]  HOXA-AS3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091933 AK092154 AK096334 HG500117 HG500118
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)HOXA-AS3
Cluster EST : UnigeneHs.610216 [ NCBI ]
CGAP (NCI)Hs.610216
Alternative Splicing GalleryENSG00000254369
Gene ExpressionHOXA-AS3 [ NCBI-GEO ]   HOXA-AS3 [ EBI - ARRAY_EXPRESS ]   HOXA-AS3 [ SEEK ]   HOXA-AS3 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA-AS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100133311
GTEX Portal (Tissue expression)HOXA-AS3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOXA-AS3
DMDM Disease mutations100133311
Blocks (Seattle)HOXA-AS3
Human Protein AtlasENSG00000254369
Protein Interaction databases
FunCoupENSG00000254369
BioGRIDHOXA-AS3
STRING (EMBL)HOXA-AS3
ZODIACHOXA-AS3
Ontologies - Pathways
Huge Navigator HOXA-AS3 [HugePedia]
snp3D : Map Gene to Disease100133311
BioCentury BCIQHOXA-AS3
ClinGenHOXA-AS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133311
Clinical trialHOXA-AS3
Miscellaneous
canSAR (ICR)HOXA-AS3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA-AS3
EVEXHOXA-AS3
GoPubMedHOXA-AS3
iHOPHOXA-AS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:05 CET 2017

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