HOXA1 (homeobox A1)

Identity

Other names	BSAS
	HOX1
	HOX1F
	MGC45232
HGNC	HOXA1
Location	7p15.2
Location_base_pair	Starts at 27099139 and ends at 27102150 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	HOXA1   5099
Entrez_Gene	HOXA1  3198  homeobox A1
	Cards
GeneCards	HOXA1
Ensembl	HOXA1 [Search_View]   ENSG00000105991 [Gene_View]
Genatlas	HOXA1
GeneLynx	HOXA1
eGenome	HOXA1
euGene	3198
	Genomic and cartography
GoldenPath	HOXA1  -  7p15.2   chr7:27099139-27102150 -  7p15.2   [Description]    (hg18-March_2006)
Ensembl	HOXA1 - 7p15.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	HOXA1
	Gene and transcription
Genbank	AK308067 [ ENTREZ ]
Genbank	AK313514 [ ENTREZ ]
Genbank	BC032547 [ ENTREZ ]
Genbank	DB246535 [ ENTREZ ]
Genbank	DQ890884 [ ENTREZ ]
RefSeq	NM_005522 [ SRS ]    NM_005522 [ ENTREZ ]
RefSeq	NM_153620 [ SRS ]    NM_153620 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
AceView	HOXA1 AceView - NCBI
Unigene	Hs.67397 [ SRS ]    Hs.67397 [ NCBI ]     HS67397 [ spliceNest ]
Fast-db	3159 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P49639 [ SRS]    P49639 [ EXPASY ]     P49639 [ INTERPRO ]     P49639 [ UNIPROT ]
Prosite	PS00032 ANTENNAPEDIA [ SRS ]    PS00032 ANTENNAPEDIA [ Expasy ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001827 Antennapedia [ SRS ]    IPR001827 Antennapedia [ EBI ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
Interpro	IPR000047 HTH_lambrepressr [ SRS ]    IPR000047 HTH_lambrepressr [ EBI ]
CluSTr	P49639
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	P49639 HXA1_HUMAN [ Domain structure ]   P49639 HXA1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P49639
HPRD	00843
	Protein Interaction databases
DIP	P49639
IntAct	P49639
	Polymorphism : SNP, mutations, diseases
OMIM	142955;601536    [ map ]
GENECLINICS	142955;601536
SNP	HOXA1 [dbSNP-NCBI]
SNP	NM_005522 [SNP-NCI]
SNP	NM_153620 [SNP-NCI]
SNP	HOXA1 [GeneSNPs - Utah]  HOXA1] [HGBASE - SRS]
HAPMAP	HOXA1 [HAPMAP]
HGMD	HOXA1
	General knowledge
Family Browser	HOXA1 [UCSC Family Browser]
SOURCE	NM_005522
SOURCE	NM_153620
SMD	Hs.67397
SAGE	Hs.67397
GO	transcription factor activity [Amigo]  transcription factor activity
GO	RNA polymerase II transcription factor activity [Amigo]  RNA polymerase II transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	HOXA1
TreeFam	HOXA1
CTD	3198 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	HOXA1 Related clones (RZPD - Berlin)
	PubMed
PubMed	34 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:16:26 2008