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HOXA1 (homeobox A1)

Identity

Other namesBSAS
HOX1
HOX1F
HGNC (Hugo) HOXA1
LocusID (NCBI) 3198
Atlas_Id 46150
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27132614 and ends at 27135625 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HOXA1 (7p15.2) / NUP98 (11p15.4)NUP98 (11p15.4) / HOXA1 (7p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXA1   5099
Cards
Entrez_Gene (NCBI)HOXA1  3198  homeobox A1
AliasesBSAS; HOX1; HOX1F
GeneCards (Weizmann)HOXA1
Ensembl hg19 (Hinxton)ENSG00000105991 [Gene_View]  chr7:27132614-27135625 [Contig_View]  HOXA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105991 [Gene_View]  chr7:27132614-27135625 [Contig_View]  HOXA1 [Vega]
ICGC DataPortalENSG00000105991
TCGA cBioPortalHOXA1
AceView (NCBI)HOXA1
Genatlas (Paris)HOXA1
WikiGenes3198
SOURCE (Princeton)HOXA1
Genomic and cartography
GoldenPath hg19 (UCSC)HOXA1  -     chr7:27132614-27135625 -  7p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXA1  -     7p15.2   [Description]    (hg38-Dec_2013)
EnsemblHOXA1 - 7p15.2 [CytoView hg19]  HOXA1 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA1 [Mapview hg19]  HOXA1 [Mapview hg38]
OMIM142955   601536   
Gene and transcription
Genbank (Entrez)AK308067 AK313514 BC032547 DB246535 DQ890884
RefSeq transcript (Entrez)NM_005522 NM_153620
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_011813 NG_033087 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)HOXA1
Cluster EST : UnigeneHs.67397 [ NCBI ]
CGAP (NCI)Hs.67397
Alternative Splicing GalleryENSG00000105991
Gene ExpressionHOXA1 [ NCBI-GEO ]   HOXA1 [ EBI - ARRAY_EXPRESS ]   HOXA1 [ SEEK ]   HOXA1 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3198
GTEX Portal (Tissue expression)HOXA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49639 (Uniprot)
NextProtP49639  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49639
Splice isoforms : SwissVarP49639 (Swissvar)
PhosPhoSitePlusP49639
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations3198
Blocks (Seattle)HOXA1
SuperfamilyP49639
Human Protein AtlasENSG00000105991
Peptide AtlasP49639
HPRD00843
IPIIPI00027694   IPI00218317   IPI00218318   
Protein Interaction databases
DIP (DOE-UCLA)P49639
IntAct (EBI)P49639
FunCoupENSG00000105991
BioGRIDHOXA1
STRING (EMBL)HOXA1
ZODIACHOXA1
Ontologies - Pathways
QuickGOP49639
Ontology : AmiGOprotein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  sensory perception of sound  optokinetic behavior  anatomical structure morphogenesis  abducens nerve formation  outer ear morphogenesis  sequence-specific DNA binding  embryonic neurocranium morphogenesis  inner ear development  artery morphogenesis  regulation of behavior  cognition  neuromuscular process  artery development  semicircular canal formation  cochlea development  cochlea morphogenesis  
Ontology : EGO-EBIprotein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  sensory perception of sound  optokinetic behavior  anatomical structure morphogenesis  abducens nerve formation  outer ear morphogenesis  sequence-specific DNA binding  embryonic neurocranium morphogenesis  inner ear development  artery morphogenesis  regulation of behavior  cognition  neuromuscular process  artery development  semicircular canal formation  cochlea development  cochlea morphogenesis  
NDEx NetworkHOXA1
Atlas of Cancer Signalling NetworkHOXA1
Wikipedia pathwaysHOXA1
Orthology - Evolution
OrthoDB3198
GeneTree (enSembl)ENSG00000105991
Phylogenetic Trees/Animal Genes : TreeFamHOXA1
Homologs : HomoloGeneHOXA1
Homology/Alignments : Family Browser (UCSC)HOXA1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHOXA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXA1
dbVarHOXA1
ClinVarHOXA1
1000_GenomesHOXA1 
Exome Variant ServerHOXA1
ExAC (Exome Aggregation Consortium)HOXA1 (select the gene name)
Genetic variants : HAPMAP3198
Genomic Variants (DGV)HOXA1 [DGVbeta]
Mutations
ICGC Data PortalHOXA1 
TCGA Data PortalHOXA1 
Broad Tumor PortalHOXA1
OASIS PortalHOXA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXA1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXA1
DgiDB (Drug Gene Interaction Database)HOXA1
DoCM (Curated mutations)HOXA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXA1 (select a term)
intoGenHOXA1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:27132614-27135625  ENSG00000105991
CONAN: Copy Number AnalysisHOXA1 
Mutations and Diseases : HGMDHOXA1
OMIM142955    601536   
MedgenHOXA1
Genetic Testing Registry HOXA1
NextProtP49639 [Medical]
TSGene3198
GENETestsHOXA1
Huge Navigator HOXA1 [HugePedia]
snp3D : Map Gene to Disease3198
BioCentury BCIQHOXA1
ClinGenHOXA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3198
Chemical/Pharm GKB GenePA29376
Clinical trialHOXA1
Miscellaneous
canSAR (ICR)HOXA1 (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA1
EVEXHOXA1
GoPubMedHOXA1
iHOPHOXA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:53:25 CEST 2016

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