Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HOXA1 (homeobox A1)

Identity

Other namesBSAS
HOX1
HOX1F
HGNC (Hugo) HOXA1
LocusID (NCBI) 3198
Location 7p15.2
Location_base_pair Starts at 27132614 and ends at 27135625 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXA1   5099
Cards
Entrez_Gene (NCBI)HOXA1  3198  homeobox A1
GeneCards (Weizmann)HOXA1
Ensembl (Hinxton)ENSG00000105991 [Gene_View]  chr7:27132614-27135625 [Contig_View]  HOXA1 [Vega]
ICGC DataPortalENSG00000105991
cBioPortalHOXA1
AceView (NCBI)HOXA1
Genatlas (Paris)HOXA1
WikiGenes3198
SOURCE (Princeton)NM_005522 NM_153620
Genomic and cartography
GoldenPath (UCSC)HOXA1  -  7p15.2   chr7:27132614-27135625 -  7p15.2   [Description]    (hg19-Feb_2009)
EnsemblHOXA1 - 7p15.2 [CytoView]
Mapping of homologs : NCBIHOXA1 [Mapview]
OMIM142955   601536   
Gene and transcription
Genbank (Entrez)AK308067 AK313514 BC032547 DB246535 DQ890884
RefSeq transcript (Entrez)NM_005522 NM_153620
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NG_011813 NG_033087 NT_007819 NW_001839003 NW_004929329
Consensus coding sequences : CCDS (NCBI)HOXA1
Cluster EST : UnigeneHs.67397 [ NCBI ]
CGAP (NCI)Hs.67397
Alternative Splicing : Fast-db (Paris)GSHG0028073
Alternative Splicing GalleryENSG00000105991
Gene ExpressionHOXA1 [ NCBI-GEO ]     HOXA1 [ SEEK ]   HOXA1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49639 (Uniprot)
NextProtP49639  [Medical]
With graphics : InterProP49639
Splice isoforms : SwissVarP49639 (Swissvar)
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS [organisation]   Homeobox_dom [organisation]   Homeobox_metazoa [organisation]   Homeodomain-like [organisation]  
Related proteins : CluSTrP49639
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations3198
Blocks (Seattle)P49639
Human Protein AtlasENSG00000105991 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP49639
HPRD00843
IPIIPI00027694   IPI00218317   IPI00218318   
Protein Interaction databases
DIP (DOE-UCLA)P49639
IntAct (EBI)P49639
FunCoupENSG00000105991
BioGRIDHOXA1
InParanoidP49639
Interologous Interaction database P49639
IntegromeDBHOXA1
STRING (EMBL)HOXA1
Ontologies - Pathways
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  multicellular organismal development  sensory perception of sound  optokinetic behavior  motor neuron axon guidance  anatomical structure morphogenesis  anterior/posterior pattern specification  rhombomere 3 development  rhombomere 4 development  rhombomere 5 development  abducens nerve formation  facial nerve structural organization  facial nucleus development  central nervous system neuron differentiation  outer ear morphogenesis  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  embryonic neurocranium morphogenesis  inner ear development  artery morphogenesis  regulation of behavior  cognition  neuromuscular process  artery development  semicircular canal formation  cochlea development  cochlea morphogenesis  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  multicellular organismal development  sensory perception of sound  optokinetic behavior  motor neuron axon guidance  anatomical structure morphogenesis  anterior/posterior pattern specification  rhombomere 3 development  rhombomere 4 development  rhombomere 5 development  abducens nerve formation  facial nerve structural organization  facial nucleus development  central nervous system neuron differentiation  outer ear morphogenesis  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  embryonic neurocranium morphogenesis  inner ear development  artery morphogenesis  regulation of behavior  cognition  neuromuscular process  artery development  semicircular canal formation  cochlea development  cochlea morphogenesis  
Protein Interaction DatabaseHOXA1
Wikipedia pathwaysHOXA1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HOXA1
snp3D : Map Gene to Disease3198
SNP (GeneSNP Utah)HOXA1
SNP : HGBaseHOXA1
Genetic variants : HAPMAPHOXA1
Exome VariantHOXA1
1000_GenomesHOXA1 
ICGC programENSG00000105991 
Somatic Mutations in Cancer : COSMICHOXA1 
CONAN: Copy Number AnalysisHOXA1 
Mutations and Diseases : HGMDHOXA1
Genomic VariantsHOXA1  HOXA1 [DGVbeta]
dbVarHOXA1
ClinVarHOXA1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM142955    601536   
MedgenHOXA1
GENETestsHOXA1
Disease Genetic AssociationHOXA1
Huge Navigator HOXA1 [HugePedia]  HOXA1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneHOXA1
Homology/Alignments : Family Browser (UCSC)HOXA1
Phylogenetic Trees/Animal Genes : TreeFamHOXA1
Chemical/Protein Interactions : CTD3198
Chemical/Pharm GKB GenePA29376
Clinical trialHOXA1
Cancer Resource (Charite)ENSG00000105991
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
CoreMineHOXA1
iHOPHOXA1
OncoSearchHOXA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:58:23 CEST 2014

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