| Nomenclature |
|---|
| HGNC (Hugo) | HOXA13 5102 |
| Cards |
|---|
| Entrez_Gene (NCBI) | HOXA13 3209 homeobox A13 |
| Aliases | HOX1; HOX1J |
| GeneCards (Weizmann) | HOXA13 |
| Ensembl hg19 (Hinxton) | ENSG00000106031 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000106031 [Gene_View] ENSG00000106031 [Sequence] chr7:27196880-27200106 [Contig_View] HOXA13 [Vega] |
| ICGC DataPortal | ENSG00000106031 |
| TCGA cBioPortal | HOXA13 |
| AceView (NCBI) | HOXA13 |
| Genatlas (Paris) | HOXA13 |
| WikiGenes | 3209 |
| SOURCE (Princeton) | HOXA13 |
| Genetics Home Reference (NIH) | HOXA13 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | HOXA13 - chr7:27196880-27200106 - 7p15.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | HOXA13 - 7p15.2 [Description] (hg19-Feb_2009) |
| Ensembl | HOXA13 - 7p15.2 [CytoView hg19] HOXA13 - 7p15.2 [CytoView hg38] |
| Mapping of homologs : NCBI | HOXA13 [Mapview hg19] HOXA13 [Mapview hg38] |
| OMIM | 140000 142959 176305 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AL597666 BC016712 BC075791 |
| RefSeq transcript (Entrez) | NM_000522 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | HOXA13 |
| Cluster EST : Unigene | Hs.592172 [ NCBI ] |
| CGAP (NCI) | Hs.592172 |
| Alternative Splicing Gallery | ENSG00000106031 |
| Gene Expression | HOXA13 [ NCBI-GEO ] HOXA13 [ EBI - ARRAY_EXPRESS ]
HOXA13 [ SEEK ] HOXA13 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | HOXA13 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 3209 |
| GTEX Portal (Tissue expression) | HOXA13 |
| Human Protein Atlas | ENSG00000106031-HOXA13 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | P31271 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | P31271 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | P31271 |
| Splice isoforms : SwissVar | P31271 |
| PhosPhoSitePlus | P31271 |
| Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom HoxA13_N |
| Domain families : Pfam (Sanger) | Homeobox (PF00046) HoxA13_N (PF12284) |
| Domain families : Pfam (NCBI) | pfam00046 pfam12284 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| Conserved Domain (NCBI) | HOXA13 |
| DMDM Disease mutations | 3209 |
| Blocks (Seattle) | HOXA13 |
| PDB (SRS) | 2L7Z |
| PDB (PDBSum) | 2L7Z |
| PDB (IMB) | 2L7Z |
| PDB (RSDB) | 2L7Z |
| Structural Biology KnowledgeBase | 2L7Z |
| SCOP (Structural Classification of Proteins) | 2L7Z |
| CATH (Classification of proteins structures) | 2L7Z |
| Superfamily | P31271 |
| Human Protein Atlas [tissue] | ENSG00000106031-HOXA13 [tissue] |
| Peptide Atlas | P31271 |
| HPRD | 00847 |
| IPI | IPI00305850 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | P31271 |
| IntAct (EBI) | P31271 |
| FunCoup | ENSG00000106031 |
| BioGRID | HOXA13 |
| STRING (EMBL) | HOXA13 |
| ZODIAC | HOXA13 |
| Ontologies - Pathways |
|---|
| QuickGO | P31271 |
| Ontology : AmiGO | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific skeletal system development DNA binding nucleus regulation of transcription by RNA polymerase II sequence-specific DNA binding sequence-specific DNA binding |
| Ontology : EGO-EBI | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific skeletal system development DNA binding nucleus regulation of transcription by RNA polymerase II sequence-specific DNA binding sequence-specific DNA binding |
| NDEx Network | HOXA13 |
| Atlas of Cancer Signalling Network | HOXA13 |
| Wikipedia pathways | HOXA13 |
| Orthology - Evolution |
|---|
| OrthoDB | 3209 |
| GeneTree (enSembl) | ENSG00000106031 |
| Phylogenetic Trees/Animal Genes : TreeFam | HOXA13 |
| HOVERGEN | P31271 |
| HOGENOM | P31271 |
| Homologs : HomoloGene | HOXA13 |
| Homology/Alignments : Family Browser (UCSC) | HOXA13 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | NUP98/HOXA13 [11p15.4/7p15.2] [t(7;11)(p15;p15)] |
| Fusion : Quiver | HOXA13 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | HOXA13 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | HOXA13 |
| dbVar | HOXA13 |
| ClinVar | HOXA13 |
| 1000_Genomes | HOXA13 |
| Exome Variant Server | HOXA13 |
| ExAC (Exome Aggregation Consortium) | ENSG00000106031 |
| GNOMAD Browser | ENSG00000106031 |
| Varsome Browser | HOXA13 |
| Genetic variants : HAPMAP | 3209 |
| Genomic Variants (DGV) | HOXA13 [DGVbeta] |
| DECIPHER | HOXA13 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | HOXA13 |
| Mutations |
|---|
| ICGC Data Portal | HOXA13 |
| TCGA Data Portal | HOXA13 |
| Broad Tumor Portal | HOXA13 |
| OASIS Portal | HOXA13 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | HOXA13 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | HOXA13 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search HOXA13 |
| DgiDB (Drug Gene Interaction Database) | HOXA13 |
| DoCM (Curated mutations) | HOXA13 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | HOXA13 (select a term) |
| intoGen | HOXA13 |
| Cancer3D | HOXA13(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 140000 142959 176305 |
| Orphanet | 2259 2668 |
| DisGeNET | HOXA13 |
| Medgen | HOXA13 |
| Genetic Testing Registry | HOXA13
|
| NextProt | P31271 [Medical] |
| TSGene | 3209 |
| GENETests | HOXA13 |
| Target Validation | HOXA13 |
| Huge Navigator |
HOXA13 [HugePedia] |
| snp3D : Map Gene to Disease | 3209 |
| BioCentury BCIQ | HOXA13 |
| ClinGen | HOXA13 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 3209 |
| Chemical/Pharm GKB Gene | PA29379 |
| Clinical trial | HOXA13 |
| Miscellaneous |
|---|
| canSAR (ICR) | HOXA13 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 65 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | HOXA13 |
| EVEX | HOXA13 |
| GoPubMed | HOXA13 |
| iHOP | HOXA13 |
