| Nomenclature |
|---|
| HGNC (Hugo) | HOXA13 5102 |
| Cards |
|---|
| Entrez_Gene (NCBI) | HOXA13 homeobox A13 |
| Aliases | HOX1; HOX1J |
| GeneCards (Weizmann) | HOXA13 |
| Ensembl hg19 (Hinxton) | ENSG00000106031 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000106031 [Gene_View] ENSG00000106031 [Sequence] chr7:27194371-27200091 [Contig_View] HOXA13 [Vega] |
| ICGC DataPortal | ENSG00000106031 |
| TCGA cBioPortal | HOXA13 |
| AceView (NCBI) | HOXA13 |
| Genatlas (Paris) | HOXA13 |
| SOURCE (Princeton) | HOXA13 |
| Genetics Home Reference (NIH) | HOXA13 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | HOXA13 - chr7:27194371-27200091 - 7p15.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | HOXA13 - 7p15.2 [Description] (hg19-Feb_2009) |
| GoldenPath | HOXA13 - 7p15.2 [CytoView hg19] HOXA13 - 7p15.2 [CytoView hg38] |
| ImmunoBase | ENSG00000106031 |
| genome Data Viewer NCBI | HOXA13 [Mapview hg19] |
| OMIM | 140000 142959 176305 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AL597666 BC016712 BC075791 |
| RefSeq transcript (Entrez) | NM_000522 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | HOXA13 |
| Alternative Splicing Gallery | ENSG00000106031 |
| Gene Expression | HOXA13 [ NCBI-GEO ] HOXA13 [ EBI - ARRAY_EXPRESS ]
HOXA13 [ SEEK ] HOXA13 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | HOXA13 [ Firebrowse - Broad ] |
| Genevisible | Expression of HOXA13 in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 3209 |
| GTEX Portal (Tissue expression) | HOXA13 |
| Human Protein Atlas | ENSG00000106031-HOXA13 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | P31271 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | P31271 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | P31271 |
| Splice isoforms : SwissVar | P31271 |
| PhosPhoSitePlus | P31271 |
| Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom HoxA13_N |
| Domain families : Pfam (Sanger) | Homeodomain (PF00046) HoxA13_N (PF12284) |
| Domain families : Pfam (NCBI) | pfam00046 pfam12284 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| Conserved Domain (NCBI) | HOXA13 |
| Blocks (Seattle) | HOXA13 |
| PDB (RSDB) | 2L7Z |
| PDB Europe | 2L7Z |
| PDB (PDBSum) | 2L7Z |
| PDB (IMB) | 2L7Z |
| Structural Biology KnowledgeBase | 2L7Z |
| SCOP (Structural Classification of Proteins) | 2L7Z |
| CATH (Classification of proteins structures) | 2L7Z |
| Superfamily | P31271 |
| Human Protein Atlas [tissue] | ENSG00000106031-HOXA13 [tissue] |
| Peptide Atlas | P31271 |
| HPRD | 00847 |
| IPI | IPI00305850 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | P31271 |
| IntAct (EBI) | P31271 |
| BioGRID | HOXA13 |
| STRING (EMBL) | HOXA13 |
| ZODIAC | HOXA13 |
| Ontologies - Pathways |
|---|
| QuickGO | P31271 |
| Ontology : AmiGO | chromatin RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific skeletal system development vasculogenesis endothelial cell morphogenesis tissue homeostasis ventricular septum development DNA binding nucleoplasm chromosome regulation of transcription by RNA polymerase II regulation of BMP signaling pathway male genitalia development embryonic forelimb morphogenesis sequence-specific DNA binding sequence-specific DNA binding intermediate filament cytoskeleton positive regulation of mitotic nuclear division positive regulation of transcription by RNA polymerase II inner ear development artery morphogenesis branching involved in prostate gland morphogenesis endothelial cell fate specification sequence-specific double-stranded DNA binding positive regulation of mesenchymal cell apoptotic process |
| Ontology : EGO-EBI | chromatin RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific skeletal system development vasculogenesis endothelial cell morphogenesis tissue homeostasis ventricular septum development DNA binding nucleoplasm chromosome regulation of transcription by RNA polymerase II regulation of BMP signaling pathway male genitalia development embryonic forelimb morphogenesis sequence-specific DNA binding sequence-specific DNA binding intermediate filament cytoskeleton positive regulation of mitotic nuclear division positive regulation of transcription by RNA polymerase II inner ear development artery morphogenesis branching involved in prostate gland morphogenesis endothelial cell fate specification sequence-specific double-stranded DNA binding positive regulation of mesenchymal cell apoptotic process |
| NDEx Network | HOXA13 |
| Atlas of Cancer Signalling Network | HOXA13 |
| Wikipedia pathways | HOXA13 |
| Orthology - Evolution |
|---|
| OrthoDB | 3209 |
| GeneTree (enSembl) | ENSG00000106031 |
| Phylogenetic Trees/Animal Genes : TreeFam | HOXA13 |
| HOGENOM | P31271 |
| Homologs : HomoloGene | HOXA13 |
| Homology/Alignments : Family Browser (UCSC) | HOXA13 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | NUP98/HOXA13 [11p15.4/7p15.2] |
| Fusion : Quiver | HOXA13 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | HOXA13 [hg38] |
| dbVar | HOXA13 |
| ClinVar | HOXA13 |
| Monarch | HOXA13 |
| 1000_Genomes | HOXA13 |
| Exome Variant Server | HOXA13 |
| GNOMAD Browser | ENSG00000106031 |
| Varsome Browser | HOXA13 |
| Genomic Variants (DGV) | HOXA13 [DGVbeta] |
| DECIPHER | HOXA13 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | HOXA13 |
| Mutations |
|---|
| ICGC Data Portal | HOXA13 |
| TCGA Data Portal | HOXA13 |
| Broad Tumor Portal | HOXA13 |
| OASIS Portal | HOXA13 [ Somatic mutations - Copy number] |
| Cancer Gene: Census | HOXA13 |
| Somatic Mutations in Cancer : COSMIC | HOXA13 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | HOXA13 |
| Mutations and Diseases : HGMD | HOXA13 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search HOXA13 |
| DgiDB (Drug Gene Interaction Database) | HOXA13 |
| DoCM (Curated mutations) | HOXA13 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | HOXA13 (select a term) |
| intoGen | HOXA13 |
| Cancer3D | HOXA13(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 140000 142959 176305 |
| Orphanet | 2259 2668 |
| DisGeNET | HOXA13 |
| Medgen | HOXA13 |
| Genetic Testing Registry | HOXA13
|
| NextProt | P31271 [Medical] |
| GENETests | HOXA13 |
| Target Validation | HOXA13 |
| Huge Navigator |
HOXA13 [HugePedia] |
| ClinGen | HOXA13 |
| Clinical trials, drugs, therapy |
|---|
| MyCancerGenome | HOXA13 |
| Protein Interactions : CTD | |
| Pharm GKB Gene | PA29379 |
| Pharos | P31271 |
| Clinical trial | HOXA13 |
| Miscellaneous |
|---|
| canSAR (ICR) | HOXA13 (select the gene name) |
| Harmonizome | HOXA13 |
| DataMed Index | HOXA13 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 81 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| EVEX | HOXA13 |
