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HOXA3 (homeobox A3)

Identity

Alias_namesHOX1E
HOX1
homeo box A3
Other alias
HGNC (Hugo) HOXA3
LocusID (NCBI) 3200
Atlas_Id 56189
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27106190 and ends at 27119595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOXA3 (7p15.2) / KIAA0895 (7p14.2)YY1AP1 (1q22) / HOXA3 (7p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXA3   5104
Cards
Entrez_Gene (NCBI)HOXA3  3200  homeobox A3
AliasesHOX1; HOX1E
GeneCards (Weizmann)HOXA3
Ensembl hg19 (Hinxton)ENSG00000105997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105997 [Gene_View]  chr7:27106190-27119595 [Contig_View]  HOXA3 [Vega]
ICGC DataPortalENSG00000105997
TCGA cBioPortalHOXA3
AceView (NCBI)HOXA3
Genatlas (Paris)HOXA3
WikiGenes3200
SOURCE (Princeton)HOXA3
Genetics Home Reference (NIH)HOXA3
Genomic and cartography
GoldenPath hg38 (UCSC)HOXA3  -     chr7:27106190-27119595 -  7p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXA3  -     7p15.2   [Description]    (hg19-Feb_2009)
EnsemblHOXA3 - 7p15.2 [CytoView hg19]  HOXA3 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA3 [Mapview hg19]  HOXA3 [Mapview hg38]
OMIM142954   
Gene and transcription
Genbank (Entrez)AK056567 AK094200 BC015180 BM984673 DQ655986
RefSeq transcript (Entrez)NM_030661 NM_153631 NM_153632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXA3
Cluster EST : UnigeneHs.732333 [ NCBI ]
CGAP (NCI)Hs.732333
Alternative Splicing GalleryENSG00000105997
Gene ExpressionHOXA3 [ NCBI-GEO ]   HOXA3 [ EBI - ARRAY_EXPRESS ]   HOXA3 [ SEEK ]   HOXA3 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3200
GTEX Portal (Tissue expression)HOXA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43365   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43365  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43365
Splice isoforms : SwissVarO43365
PhosPhoSitePlusO43365
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)DUF4074    Homeobox-like    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)DUF4074 (PF13293)    Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam13293    pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXA3
DMDM Disease mutations3200
Blocks (Seattle)HOXA3
SuperfamilyO43365
Human Protein AtlasENSG00000105997
Peptide AtlasO43365
HPRD00842
IPIIPI00012050   IPI00374172   IPI00852652   IPI01014218   IPI00980967   
Protein Interaction databases
DIP (DOE-UCLA)O43365
IntAct (EBI)O43365
FunCoupENSG00000105997
BioGRIDHOXA3
STRING (EMBL)HOXA3
ZODIACHOXA3
Ontologies - Pathways
QuickGOO43365
Ontology : AmiGOangiogenesis  blood vessel remodeling  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  anterior/posterior pattern specification  specification of animal organ position  glossopharyngeal nerve morphogenesis  thyroid gland development  sequence-specific DNA binding  thymus development  animal organ formation  embryonic skeletal system morphogenesis  cartilage development  parathyroid gland development  HMG box domain binding  
Ontology : EGO-EBIangiogenesis  blood vessel remodeling  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  anterior/posterior pattern specification  specification of animal organ position  glossopharyngeal nerve morphogenesis  thyroid gland development  sequence-specific DNA binding  thymus development  animal organ formation  embryonic skeletal system morphogenesis  cartilage development  parathyroid gland development  HMG box domain binding  
NDEx NetworkHOXA3
Atlas of Cancer Signalling NetworkHOXA3
Wikipedia pathwaysHOXA3
Orthology - Evolution
OrthoDB3200
GeneTree (enSembl)ENSG00000105997
Phylogenetic Trees/Animal Genes : TreeFamHOXA3
HOVERGENO43365
HOGENOMO43365
Homologs : HomoloGeneHOXA3
Homology/Alignments : Family Browser (UCSC)HOXA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXA3
dbVarHOXA3
ClinVarHOXA3
1000_GenomesHOXA3 
Exome Variant ServerHOXA3
ExAC (Exome Aggregation Consortium)HOXA3 (select the gene name)
Genetic variants : HAPMAP3200
Genomic Variants (DGV)HOXA3 [DGVbeta]
DECIPHERHOXA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOXA3 
Mutations
ICGC Data PortalHOXA3 
TCGA Data PortalHOXA3 
Broad Tumor PortalHOXA3
OASIS PortalHOXA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXA3
DgiDB (Drug Gene Interaction Database)HOXA3
DoCM (Curated mutations)HOXA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXA3 (select a term)
intoGenHOXA3
Cancer3DHOXA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142954   
Orphanet
MedgenHOXA3
Genetic Testing Registry HOXA3
NextProtO43365 [Medical]
TSGene3200
GENETestsHOXA3
Target ValidationHOXA3
Huge Navigator HOXA3 [HugePedia]
snp3D : Map Gene to Disease3200
BioCentury BCIQHOXA3
ClinGenHOXA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3200
Chemical/Pharm GKB GenePA29381
Clinical trialHOXA3
Miscellaneous
canSAR (ICR)HOXA3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA3
EVEXHOXA3
GoPubMedHOXA3
iHOPHOXA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:04 CEST 2017

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