| Nomenclature |
|---|
| HGNC (Hugo) | HOXA4 5105 |
| Cards |
|---|
| Entrez_Gene (NCBI) | HOXA4 3201 homeobox A4 |
| Aliases | HOX1; HOX1D |
| GeneCards (Weizmann) | HOXA4 |
| Ensembl hg19 (Hinxton) | ENSG00000197576 [Gene_View] chr7:27168126-27170399 [Contig_View] HOXA4 [Vega] |
| Ensembl hg38 (Hinxton) | ENSG00000197576 [Gene_View] chr7:27168126-27170399 [Contig_View] HOXA4 [Vega] |
| ICGC DataPortal | ENSG00000197576 |
| TCGA cBioPortal | HOXA4 |
| AceView (NCBI) | HOXA4 |
| Genatlas (Paris) | HOXA4 |
| WikiGenes | 3201 |
| SOURCE (Princeton) | HOXA4 |
| Genomic and cartography |
|---|
| GoldenPath hg19 (UCSC) | HOXA4 - chr7:27168126-27170399 - 7p15.2 [Description] (hg19-Feb_2009) |
| GoldenPath hg38 (UCSC) | HOXA4 - 7p15.2 [Description] (hg38-Dec_2013) |
| Ensembl | HOXA4 - 7p15.2 [CytoView hg19] HOXA4 - 7p15.2 [CytoView hg38] |
| Mapping of homologs : NCBI | HOXA4 [Mapview hg19] HOXA4 [Mapview hg38] |
| OMIM | 142953 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AI277552 AW445008 BC126994 BC160036 M74297 |
| RefSeq transcript (Entrez) | NM_002141 |
| RefSeq genomic (Entrez) | NC_000007 NC_018918 NT_007819 NW_004929329 |
| Consensus coding sequences : CCDS (NCBI) | HOXA4 |
| Cluster EST : Unigene | Hs.721126 [ NCBI ] |
| CGAP (NCI) | Hs.721126 |
| Alternative Splicing Gallery | ENSG00000197576 |
| Gene Expression | HOXA4 [ NCBI-GEO ] HOXA4 [ EBI - ARRAY_EXPRESS ]
HOXA4 [ SEEK ] HOXA4 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | HOXA4 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 3201 |
| GTEX Portal (Tissue expression) | HOXA4 |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q00056 (Uniprot) |
| NextProt | Q00056 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q00056 |
| Splice isoforms : SwissVar | Q00056 (Swissvar) |
| PhosPhoSitePlus | Q00056 |
| Domaine pattern : Prosite (Expaxy) | ANTENNAPEDIA (PS00032) HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox_antennapedia Homeobox_Antennapedia_CS Homeobox_CS Homeobox_dom Homeobox_metazoa Homeodomain-like |
| Domain families : Pfam (Sanger) | Homeobox (PF00046) |
| Domain families : Pfam (NCBI) | pfam00046 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| DMDM Disease mutations | 3201 |
| Blocks (Seattle) | HOXA4 |
| Superfamily | Q00056 |
| Human Protein Atlas | ENSG00000197576 |
| Peptide Atlas | Q00056 |
| HPRD | 00841 |
| IPI | IPI00020926 IPI00828097 IPI01022445 IPI01022302 IPI01021536 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q00056 |
| IntAct (EBI) | Q00056 |
| FunCoup | ENSG00000197576 |
| BioGRID | HOXA4 |
| STRING (EMBL) | HOXA4 |
| ZODIAC | HOXA4 |
| Ontologies - Pathways |
|---|
| QuickGO | Q00056 |
| Ontology : AmiGO | transcription factor activity, sequence-specific DNA binding nucleus transcription, DNA-templated regulation of transcription, DNA-templated multicellular organism development anatomical structure morphogenesis sequence-specific DNA binding |
| Ontology : EGO-EBI | transcription factor activity, sequence-specific DNA binding nucleus transcription, DNA-templated regulation of transcription, DNA-templated multicellular organism development anatomical structure morphogenesis sequence-specific DNA binding |
| NDEx Network | HOXA4 |
| Atlas of Cancer Signalling Network | HOXA4 |
| Wikipedia pathways | HOXA4 |
| Orthology - Evolution |
|---|
| OrthoDB | 3201 |
| GeneTree (enSembl) | ENSG00000197576 |
| Phylogenetic Trees/Animal Genes : TreeFam | HOXA4 |
| Homologs : HomoloGene | HOXA4 |
| Homology/Alignments : Family Browser (UCSC) | HOXA4 |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP, variants |
|---|
| NCBI Variation Viewer | HOXA4 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | HOXA4 |
| dbVar | HOXA4 |
| ClinVar | HOXA4 |
| 1000_Genomes | HOXA4 |
| Exome Variant Server | HOXA4 |
| ExAC (Exome Aggregation Consortium) | HOXA4 (select the gene name) |
| Genetic variants : HAPMAP | 3201 |
| Genomic Variants (DGV) | HOXA4 [DGVbeta] |
| Mutations |
|---|
| ICGC Data Portal | HOXA4 |
| TCGA Data Portal | HOXA4 |
| Broad Tumor Portal | HOXA4 |
| OASIS Portal | HOXA4 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | HOXA4 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search HOXA4 |
| DgiDB (Drug Gene Interaction Database) | HOXA4 |
| DoCM (Curated mutations) | HOXA4 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | HOXA4 (select a term) |
| intoGen | HOXA4 |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] |
| Diseases |
|---|
| DECIPHER (Syndromes) | 7:27168126-27170399 ENSG00000197576 |
| CONAN: Copy Number Analysis | HOXA4 |
| Mutations and Diseases : HGMD | HOXA4 |
| OMIM | 142953 |
| Medgen | HOXA4 |
| Genetic Testing Registry | HOXA4
|
| NextProt | Q00056 [Medical] |
| TSGene | 3201 |
| GENETests | HOXA4 |
| Huge Navigator |
HOXA4 [HugePedia] |
| snp3D : Map Gene to Disease | 3201 |
| BioCentury BCIQ | HOXA4 |
| ClinGen | HOXA4 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 3201 |
| Chemical/Pharm GKB Gene | PA29382 |
| Clinical trial | HOXA4 |
| Miscellaneous |
|---|
| canSAR (ICR) | HOXA4 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 30 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | HOXA4 |
| EVEX | HOXA4 |
| GoPubMed | HOXA4 |
| iHOP | HOXA4 |
