Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HOXA4 (homeobox A4)

Identity

Alias_namesHOX1D
HOX1
homeo box A4
Other alias
HGNC (Hugo) HOXA4
LocusID (NCBI) 3201
Atlas_Id 46366
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27128507 and ends at 27130780 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXA4   5105
Cards
Entrez_Gene (NCBI)HOXA4  3201  homeobox A4
AliasesHOX1; HOX1D
GeneCards (Weizmann)HOXA4
Ensembl hg19 (Hinxton)ENSG00000197576 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197576 [Gene_View]  chr7:27128507-27130780 [Contig_View]  HOXA4 [Vega]
ICGC DataPortalENSG00000197576
TCGA cBioPortalHOXA4
AceView (NCBI)HOXA4
Genatlas (Paris)HOXA4
WikiGenes3201
SOURCE (Princeton)HOXA4
Genetics Home Reference (NIH)HOXA4
Genomic and cartography
GoldenPath hg38 (UCSC)HOXA4  -     chr7:27128507-27130780 -  7p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXA4  -     7p15.2   [Description]    (hg19-Feb_2009)
EnsemblHOXA4 - 7p15.2 [CytoView hg19]  HOXA4 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA4 [Mapview hg19]  HOXA4 [Mapview hg38]
OMIM142953   
Gene and transcription
Genbank (Entrez)AI277552 AW445008 BC126994 M74297
RefSeq transcript (Entrez)NM_002141
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXA4
Cluster EST : UnigeneHs.721126 [ NCBI ]
CGAP (NCI)Hs.721126
Alternative Splicing GalleryENSG00000197576
Gene ExpressionHOXA4 [ NCBI-GEO ]   HOXA4 [ EBI - ARRAY_EXPRESS ]   HOXA4 [ SEEK ]   HOXA4 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3201
GTEX Portal (Tissue expression)HOXA4
Human Protein AtlasENSG00000197576-HOXA4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00056   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00056  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00056
Splice isoforms : SwissVarQ00056
PhosPhoSitePlusQ00056
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXA4
DMDM Disease mutations3201
Blocks (Seattle)HOXA4
SuperfamilyQ00056
Human Protein Atlas [tissue]ENSG00000197576-HOXA4 [tissue]
Peptide AtlasQ00056
HPRD00841
IPIIPI00020926   IPI00828097   IPI01022445   IPI01022302   IPI01021536   
Protein Interaction databases
DIP (DOE-UCLA)Q00056
IntAct (EBI)Q00056
FunCoupENSG00000197576
BioGRIDHOXA4
STRING (EMBL)HOXA4
ZODIACHOXA4
Ontologies - Pathways
QuickGOQ00056
Ontology : AmiGODNA binding transcription factor activity  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  anatomical structure morphogenesis  nuclear body  sequence-specific DNA binding  
Ontology : EGO-EBIDNA binding transcription factor activity  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  anatomical structure morphogenesis  nuclear body  sequence-specific DNA binding  
NDEx NetworkHOXA4
Atlas of Cancer Signalling NetworkHOXA4
Wikipedia pathwaysHOXA4
Orthology - Evolution
OrthoDB3201
GeneTree (enSembl)ENSG00000197576
Phylogenetic Trees/Animal Genes : TreeFamHOXA4
HOVERGENQ00056
HOGENOMQ00056
Homologs : HomoloGeneHOXA4
Homology/Alignments : Family Browser (UCSC)HOXA4
Gene fusions - Rearrangements
Fusion : QuiverHOXA4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXA4
dbVarHOXA4
ClinVarHOXA4
1000_GenomesHOXA4 
Exome Variant ServerHOXA4
ExAC (Exome Aggregation Consortium)ENSG00000197576
GNOMAD BrowserENSG00000197576
Genetic variants : HAPMAP3201
Genomic Variants (DGV)HOXA4 [DGVbeta]
DECIPHERHOXA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOXA4 
Mutations
ICGC Data PortalHOXA4 
TCGA Data PortalHOXA4 
Broad Tumor PortalHOXA4
OASIS PortalHOXA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXA4
DgiDB (Drug Gene Interaction Database)HOXA4
DoCM (Curated mutations)HOXA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXA4 (select a term)
intoGenHOXA4
Cancer3DHOXA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142953   
Orphanet
DisGeNETHOXA4
MedgenHOXA4
Genetic Testing Registry HOXA4
NextProtQ00056 [Medical]
TSGene3201
GENETestsHOXA4
Target ValidationHOXA4
Huge Navigator HOXA4 [HugePedia]
snp3D : Map Gene to Disease3201
BioCentury BCIQHOXA4
ClinGenHOXA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3201
Chemical/Pharm GKB GenePA29382
Clinical trialHOXA4
Miscellaneous
canSAR (ICR)HOXA4 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA4
EVEXHOXA4
GoPubMedHOXA4
iHOPHOXA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:16:37 CET 2018
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