Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HOXA4 (homeobox A4)

Identity

Other namesHOX1
HOX1D
HGNC (Hugo) HOXA4
LocusID (NCBI) 3201
Location 7p15.2
Location_base_pair Starts at 27168126 and ends at 27170399 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXA4   5105
Entrez_Gene (NCBI)HOXA4  3201  homeobox A4
Cards
GeneCards (Weizmann)HOXA4
Ensembl (Hinxton)ENSG00000197576 [Gene_View]  chr7:27168126-27170399 [Contig_View]  HOXA4 [Vega]
AceView (NCBI)HOXA4
Genatlas (Paris)HOXA4
SOURCE (Stanford)NM_002141
Genomic and cartography
GoldenPath (UCSC)HOXA4  -  7p15.2   chr7:27168126-27170399 -  7p15.2   [Description]    (hg19-Feb_2009)
EnsemblHOXA4 - 7p15.2 [CytoView]
Mapping of homologs : NCBIHOXA4 [Mapview]
OMIM142953   
Gene and transcription
Genbank (Entrez)AI277552 AW445008 BC126994 BC160036 M74297
RefSeq transcript (SRS)NM_002141
RefSeq transcript (Entrez)NM_002141
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007819 NT_079592 NW_001839003 NW_004078029
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007819 NT_079592 NW_001839003 NW_004078029
Consensus coding sequences : CCDS (NCBI)HOXA4
Cluster EST : UnigeneHs.721126 [ SRS ] Hs.721126 [ NCBI ]
CGAP (NCI)Hs.721126
Alternative Splicing : Fast-db (Paris)GSHG0028076
Alternative Splicing GalleryENSG00000197576
Gene ExpressionHOXA4 [ NCBI-GEO ]   HOXA4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00056 (SRS) Q00056 (Uniprot)
NextProtQ00056
With graphics : InterProQ00056
Splice isoforms : SwissVarQ00056(Swissvar)
Domaine pattern : Prosite (SRS)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like   
Domains : Interpro (EBI)Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like   
Related proteins : CluSTrQ00056
Domain families : Pfam (SRS)Homeobox (PF00046)   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM3201
Blocks (Seattle)Q00056
Human Protein AtlasENSG00000197576
HPRD00841
IPIIPI00020926   IPI00828097   IPI01022445   IPI01022302   IPI01021536   
Protein Interaction databases
DIP (DOE-UCLA)Q00056
IntAct (EBI)Q00056
FunCoupENSG00000197576
REACTOMEHOXA4
Protein Interaction Database3201
BioGRIDHOXA4
InParanoidQ00056
Interologous Interaction database Q00056
IntegromeDBHOXA4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HOXA4
SNP (GeneSNP Utah)HOXA4
SNP : HGBaseHOXA4
Genetic variants : HAPMAPHOXA4
Somatic Mutations in Cancer : COSMICHOXA4 
CONAN: Copy Number AnalysisHOXA4 
Mutations and Diseases : HGMDHOXA4
OMIM142953   
GENETests142953   
Disease Genetic AssociationHOXA4
Huge Navigator HOXA4 [HugePedia]  HOXA4 [HugeCancerGEM]
Genomic VariantsHOXA4  HOXA4 [DGVbeta]
snp3D : Map Gene to Disease3201
General knowledge
Homologs : HomoloGeneHOXA4
Homology/Alignments : Family Browser (UCSC)HOXA4
Phylogenetic Trees/Animal Genes : TreeFamHOXA4
Chemical/Protein Interactions : CTD3201
Chemical/Pharm GKB GenePA29382
Clinical trialHOXA4
Cancer Resource (Charite)ENSG00000197576
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  anatomical structure morphogenesis  anterior/posterior pattern specification  sequence-specific DNA binding  embryonic skeletal system morphogenesis  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  anatomical structure morphogenesis  anterior/posterior pattern specification  sequence-specific DNA binding  embryonic skeletal system morphogenesis  
Other databases
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
PubGeneHOXA4
iHOPHOXA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:46 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.