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HOXA4 (homeobox A4)

Identity

Other namesHOX1
HOX1D
HGNC (Hugo) HOXA4
LocusID (NCBI) 3201
Atlas_Id 46366
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27168126 and ends at 27170399 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXA4   5105
Cards
Entrez_Gene (NCBI)HOXA4  3201  homeobox A4
AliasesHOX1; HOX1D
GeneCards (Weizmann)HOXA4
Ensembl hg19 (Hinxton)ENSG00000197576 [Gene_View]  chr7:27168126-27170399 [Contig_View]  HOXA4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197576 [Gene_View]  chr7:27168126-27170399 [Contig_View]  HOXA4 [Vega]
ICGC DataPortalENSG00000197576
TCGA cBioPortalHOXA4
AceView (NCBI)HOXA4
Genatlas (Paris)HOXA4
WikiGenes3201
SOURCE (Princeton)HOXA4
Genomic and cartography
GoldenPath hg19 (UCSC)HOXA4  -     chr7:27168126-27170399 -  7p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXA4  -     7p15.2   [Description]    (hg38-Dec_2013)
EnsemblHOXA4 - 7p15.2 [CytoView hg19]  HOXA4 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA4 [Mapview hg19]  HOXA4 [Mapview hg38]
OMIM142953   
Gene and transcription
Genbank (Entrez)AI277552 AW445008 BC126994 BC160036 M74297
RefSeq transcript (Entrez)NM_002141
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)HOXA4
Cluster EST : UnigeneHs.721126 [ NCBI ]
CGAP (NCI)Hs.721126
Alternative Splicing GalleryENSG00000197576
Gene ExpressionHOXA4 [ NCBI-GEO ]   HOXA4 [ EBI - ARRAY_EXPRESS ]   HOXA4 [ SEEK ]   HOXA4 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3201
GTEX Portal (Tissue expression)HOXA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00056 (Uniprot)
NextProtQ00056  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00056
Splice isoforms : SwissVarQ00056 (Swissvar)
PhosPhoSitePlusQ00056
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations3201
Blocks (Seattle)HOXA4
SuperfamilyQ00056
Human Protein AtlasENSG00000197576
Peptide AtlasQ00056
HPRD00841
IPIIPI00020926   IPI00828097   IPI01022445   IPI01022302   IPI01021536   
Protein Interaction databases
DIP (DOE-UCLA)Q00056
IntAct (EBI)Q00056
FunCoupENSG00000197576
BioGRIDHOXA4
STRING (EMBL)HOXA4
ZODIACHOXA4
Ontologies - Pathways
QuickGOQ00056
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  anatomical structure morphogenesis  sequence-specific DNA binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  anatomical structure morphogenesis  sequence-specific DNA binding  
NDEx NetworkHOXA4
Atlas of Cancer Signalling NetworkHOXA4
Wikipedia pathwaysHOXA4
Orthology - Evolution
OrthoDB3201
GeneTree (enSembl)ENSG00000197576
Phylogenetic Trees/Animal Genes : TreeFamHOXA4
Homologs : HomoloGeneHOXA4
Homology/Alignments : Family Browser (UCSC)HOXA4
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHOXA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXA4
dbVarHOXA4
ClinVarHOXA4
1000_GenomesHOXA4 
Exome Variant ServerHOXA4
ExAC (Exome Aggregation Consortium)HOXA4 (select the gene name)
Genetic variants : HAPMAP3201
Genomic Variants (DGV)HOXA4 [DGVbeta]
Mutations
ICGC Data PortalHOXA4 
TCGA Data PortalHOXA4 
Broad Tumor PortalHOXA4
OASIS PortalHOXA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXA4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXA4
DgiDB (Drug Gene Interaction Database)HOXA4
DoCM (Curated mutations)HOXA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXA4 (select a term)
intoGenHOXA4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:27168126-27170399  ENSG00000197576
CONAN: Copy Number AnalysisHOXA4 
Mutations and Diseases : HGMDHOXA4
OMIM142953   
MedgenHOXA4
Genetic Testing Registry HOXA4
NextProtQ00056 [Medical]
TSGene3201
GENETestsHOXA4
Huge Navigator HOXA4 [HugePedia]
snp3D : Map Gene to Disease3201
BioCentury BCIQHOXA4
ClinGenHOXA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3201
Chemical/Pharm GKB GenePA29382
Clinical trialHOXA4
Miscellaneous
canSAR (ICR)HOXA4 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA4
EVEXHOXA4
GoPubMedHOXA4
iHOPHOXA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:53:26 CEST 2016

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