HOXA5 (homeobox A5)

Identity

Other names	HOX1
	HOX1.3
	HOX1C
	MGC9376
HGNC	HOXA5
Location	7p15.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	HOXA5   5106
Entrez_Gene	HOXA5  3202  homeobox A5
	Cards
GeneCards	HOXA5
Ensembl	HOXA5 [Search_View]   ENSG00000106004 [Gene_View]
Genatlas	HOXA5
GeneLynx	HOXA5
eGenome	HOXA5
euGene	3202
	Genomic and cartography
GoldenPath	HOXA5  -  7p15.2   chr7:27147521-27149812 -  7p15.2   [Description]    (hg18-March_2006)
Ensembl	HOXA5 - 7p15.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	HOXA5
	Gene and transcription
Genbank	AW802886 [ ENTREZ ]
Genbank	BC013682 [ ENTREZ ]
Genbank	BI822268 [ ENTREZ ]
Genbank	BT009744 [ ENTREZ ]
Genbank	CR542256 [ ENTREZ ]
RefSeq	NM_019102 [ SRS ]    NM_019102 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
AceView	HOXA5 AceView - NCBI
Unigene	Hs.655218 [ SRS ]    Hs.655218 [ NCBI ]     HS655218 [ spliceNest ]
Fast-db	3182 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P20719 [ SRS]    P20719 [ EXPASY ]     P20719 [ INTERPRO ]     P20719 [ UNIPROT ]
Prosite	PS00032 ANTENNAPEDIA [ SRS ]    PS00032 ANTENNAPEDIA [ Expasy ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001827 Antennapedia [ SRS ]    IPR001827 Antennapedia [ EBI ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
CluSTr	P20719
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	P20719 HXA5_HUMAN [ Domain structure ]   P20719 HXA5_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P20719
HPRD	00840
	Protein Interaction databases
DIP	P20719
IntAct	P20719
	Polymorphism : SNP, mutations, diseases
OMIM	142952    [ map ]
GENECLINICS	142952
SNP	HOXA5 [dbSNP-NCBI]
SNP	NM_019102 [SNP-NCI]
SNP	HOXA5 [GeneSNPs - Utah]  HOXA5] [HGBASE - SRS]
HAPMAP	HOXA5 [HAPMAP]
HGMD	HOXA5
	General knowledge
Family Browser	HOXA5 [UCSC Family Browser]
SOURCE	NM_019102
SMD	Hs.655218
SAGE	Hs.655218
GO	skeletal development [Amigo]  skeletal development
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	pattern specification process [Amigo]  pattern specification process
GO	thyroid gland development [Amigo]  thyroid gland development
GO	multicellular organism growth [Amigo]  multicellular organism growth
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	HOXA5
TreeFam	HOXA5
CTD	3202 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	HOXA5 Related clones (RZPD - Berlin)
	PubMed
PubMed	30 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:14:34 2008