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HOXA6 (homeobox A6)

Identity

Alias_namesHOX1B
HOX1
homeo box A6
Other aliasHOX1.2
HGNC (Hugo) HOXA6
LocusID (NCBI) 3203
Atlas_Id 54081
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27185202 and ends at 27187393 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXA6   5107
Cards
Entrez_Gene (NCBI)HOXA6  3203  homeobox A6
AliasesHOX1; HOX1.2; HOX1B
GeneCards (Weizmann)HOXA6
Ensembl hg19 (Hinxton)ENSG00000106006 [Gene_View]  chr7:27185202-27187393 [Contig_View]  HOXA6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106006 [Gene_View]  chr7:27185202-27187393 [Contig_View]  HOXA6 [Vega]
ICGC DataPortalENSG00000106006
TCGA cBioPortalHOXA6
AceView (NCBI)HOXA6
Genatlas (Paris)HOXA6
WikiGenes3203
SOURCE (Princeton)HOXA6
Genetics Home Reference (NIH)HOXA6
Genomic and cartography
GoldenPath hg19 (UCSC)HOXA6  -     chr7:27185202-27187393 -  7p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXA6  -     7p15.2   [Description]    (hg38-Dec_2013)
EnsemblHOXA6 - 7p15.2 [CytoView hg19]  HOXA6 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIHOXA6 [Mapview hg19]  HOXA6 [Mapview hg38]
OMIM142951   
Gene and transcription
Genbank (Entrez)BC069497 BC104915 BC104917 BG749730 HQ448389
RefSeq transcript (Entrez)NM_024014
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)HOXA6
Cluster EST : UnigeneHs.679517 [ NCBI ]
CGAP (NCI)Hs.679517
Alternative Splicing GalleryENSG00000106006
Gene ExpressionHOXA6 [ NCBI-GEO ]   HOXA6 [ EBI - ARRAY_EXPRESS ]   HOXA6 [ SEEK ]   HOXA6 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3203
GTEX Portal (Tissue expression)HOXA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31267   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31267  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31267
Splice isoforms : SwissVarP31267
PhosPhoSitePlusP31267
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXA6
DMDM Disease mutations3203
Blocks (Seattle)HOXA6
SuperfamilyP31267
Human Protein AtlasENSG00000106006
Peptide AtlasP31267
HPRD00839
IPIIPI00010742   
Protein Interaction databases
DIP (DOE-UCLA)P31267
IntAct (EBI)P31267
FunCoupENSG00000106006
BioGRIDHOXA6
STRING (EMBL)HOXA6
ZODIACHOXA6
Ontologies - Pathways
QuickGOP31267
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anterior/posterior pattern specification  sequence-specific DNA binding  embryonic skeletal system morphogenesis  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anterior/posterior pattern specification  sequence-specific DNA binding  embryonic skeletal system morphogenesis  
NDEx NetworkHOXA6
Atlas of Cancer Signalling NetworkHOXA6
Wikipedia pathwaysHOXA6
Orthology - Evolution
OrthoDB3203
GeneTree (enSembl)ENSG00000106006
Phylogenetic Trees/Animal Genes : TreeFamHOXA6
HOVERGENP31267
HOGENOMP31267
Homologs : HomoloGeneHOXA6
Homology/Alignments : Family Browser (UCSC)HOXA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXA6
dbVarHOXA6
ClinVarHOXA6
1000_GenomesHOXA6 
Exome Variant ServerHOXA6
ExAC (Exome Aggregation Consortium)HOXA6 (select the gene name)
Genetic variants : HAPMAP3203
Genomic Variants (DGV)HOXA6 [DGVbeta]
DECIPHER (Syndromes)7:27185202-27187393  ENSG00000106006
CONAN: Copy Number AnalysisHOXA6 
Mutations
ICGC Data PortalHOXA6 
TCGA Data PortalHOXA6 
Broad Tumor PortalHOXA6
OASIS PortalHOXA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXA6
DgiDB (Drug Gene Interaction Database)HOXA6
DoCM (Curated mutations)HOXA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXA6 (select a term)
intoGenHOXA6
Cancer3DHOXA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142951   
Orphanet
MedgenHOXA6
Genetic Testing Registry HOXA6
NextProtP31267 [Medical]
TSGene3203
GENETestsHOXA6
Huge Navigator HOXA6 [HugePedia]
snp3D : Map Gene to Disease3203
BioCentury BCIQHOXA6
ClinGenHOXA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3203
Chemical/Pharm GKB GenePA29384
Clinical trialHOXA6
Miscellaneous
canSAR (ICR)HOXA6 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA6
EVEXHOXA6
GoPubMedHOXA6
iHOPHOXA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:33 CET 2017

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