Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HOXA@ (homeobox A cluster)

Identity

Alias_namesHOX1@
homeo box A cluster
Other alias
HGNC (Hugo) HOXA@
LocusID (NCBI) 3197
Atlas_Id 46479
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27092995 and ends at 27096006 bp from pter
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  Pediatric T-Cell Acute Lymphoblastic Leukemia
t(7;14)(p15;q11) TRD/HOXA10
t(7;14)(p15;q32)

External links

Nomenclature
HGNC (Hugo)HOXA@   5098
Cards
Entrez_Gene (NCBI)HOXA@  3197  homeobox A cluster
AliasesHOX1@
GeneCards (Weizmann)HOXA@
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:27092995-27096006 [Contig_View]  HOXA@ [Vega]
TCGA cBioPortalHOXA@
AceView (NCBI)HOXA@
Genatlas (Paris)HOXA@
WikiGenes3197
SOURCE (Princeton)HOXA@
Genetics Home Reference (NIH)HOXA@
Genomic and cartography
GoldenPath hg38 (UCSC)HOXA@  -     chr7:27092995-27096006 -  hg38-Dec_2013   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXA@  -     hg38-Dec_2013   [Description]    (hg19-Feb_2009)
HOXA@ - hg38-Dec_2013 [CytoView hg19]  HOXA@ - hg38-Dec_2013 [CytoView hg38]
Mapping of homologs : NCBIHOXA@ [Mapview hg19]  HOXA@ [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXA@
Gene ExpressionHOXA@ [ NCBI-GEO ]   HOXA@ [ EBI - ARRAY_EXPRESS ]   HOXA@ [ SEEK ]   HOXA@ [ MEM ]
Gene Expression Viewer (FireBrowse)HOXA@ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)3197
GTEX Portal (Tissue expression)HOXA@
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOXA@
DMDM Disease mutations3197
Blocks (Seattle)HOXA@
Protein Interaction databases
BioGRIDHOXA@
STRING (EMBL)HOXA@
ZODIACHOXA@
Ontologies - Pathways
Huge Navigator HOXA@ [HugePedia]
snp3D : Map Gene to Disease3197
BioCentury BCIQHOXA@
ClinGenHOXA@
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3197
Chemical/Pharm GKB GenePA35097
Clinical trialHOXA@
Miscellaneous
canSAR (ICR)HOXA@ (select the gene name)
DataMed IndexHOXA@
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXA@
EVEXHOXA@
GoPubMedHOXA@
iHOPHOXA@
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 21 15:49:52 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.