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HOXB13 (homeobox B13)

Identity

Alias_nameshomeo box B13
Other aliasPSGD
HGNC (Hugo) HOXB13
LocusID (NCBI) 10481
Atlas_Id 46597
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 48724765 and ends at 48728749 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOXB13 (17q21.32) / ACTG2 (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXB13   5112
LRG (Locus Reference Genomic)LRG_771
Cards
Entrez_Gene (NCBI)HOXB13  10481  homeobox B13
AliasesPSGD
GeneCards (Weizmann)HOXB13
Ensembl hg19 (Hinxton)ENSG00000159184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159184 [Gene_View]  chr17:48724765-48728749 [Contig_View]  HOXB13 [Vega]
ICGC DataPortalENSG00000159184
TCGA cBioPortalHOXB13
AceView (NCBI)HOXB13
Genatlas (Paris)HOXB13
WikiGenes10481
SOURCE (Princeton)HOXB13
Genetics Home Reference (NIH)HOXB13
Genomic and cartography
GoldenPath hg38 (UCSC)HOXB13  -     chr17:48724765-48728749 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXB13  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblHOXB13 - 17q21.32 [CytoView hg19]  HOXB13 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIHOXB13 [Mapview hg19]  HOXB13 [Mapview hg38]
OMIM604607   
Gene and transcription
Genbank (Entrez)AK225234 AK313266 AY937237 BC007092 BC070233
RefSeq transcript (Entrez)NM_006361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXB13
Cluster EST : UnigeneHs.66731 [ NCBI ]
CGAP (NCI)Hs.66731
Alternative Splicing GalleryENSG00000159184
Gene ExpressionHOXB13 [ NCBI-GEO ]   HOXB13 [ EBI - ARRAY_EXPRESS ]   HOXB13 [ SEEK ]   HOXB13 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXB13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10481
GTEX Portal (Tissue expression)HOXB13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92826   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92826  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92826
Splice isoforms : SwissVarQ92826
PhosPhoSitePlusQ92826
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    HoxA13_N   
Domain families : Pfam (Sanger)Homeobox (PF00046)    HoxA13_N (PF12284)   
Domain families : Pfam (NCBI)pfam00046    pfam12284   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXB13
DMDM Disease mutations10481
Blocks (Seattle)HOXB13
PDB (SRS)2CRA    5EDN    5EEA    5EG0    5EGO   
PDB (PDBSum)2CRA    5EDN    5EEA    5EG0    5EGO   
PDB (IMB)2CRA    5EDN    5EEA    5EG0    5EGO   
PDB (RSDB)2CRA    5EDN    5EEA    5EG0    5EGO   
Structural Biology KnowledgeBase2CRA    5EDN    5EEA    5EG0    5EGO   
SCOP (Structural Classification of Proteins)2CRA    5EDN    5EEA    5EG0    5EGO   
CATH (Classification of proteins structures)2CRA    5EDN    5EEA    5EG0    5EGO   
SuperfamilyQ92826
Human Protein AtlasENSG00000159184
Peptide AtlasQ92826
HPRD05210
IPIIPI00294863   
Protein Interaction databases
DIP (DOE-UCLA)Q92826
IntAct (EBI)Q92826
FunCoupENSG00000159184
BioGRIDHOXB13
STRING (EMBL)HOXB13
ZODIACHOXB13
Ontologies - Pathways
QuickGOQ92826
Ontology : AmiGOangiogenesis  nucleoplasm  transcription factor complex  transcription, DNA-templated  regulation of transcription, DNA-templated  epidermis development  response to wounding  response to testosterone  regulation of growth  sequence-specific DNA binding  prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis  epithelial cell maturation involved in prostate gland development  
Ontology : EGO-EBIangiogenesis  nucleoplasm  transcription factor complex  transcription, DNA-templated  regulation of transcription, DNA-templated  epidermis development  response to wounding  response to testosterone  regulation of growth  sequence-specific DNA binding  prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis  epithelial cell maturation involved in prostate gland development  
NDEx NetworkHOXB13
Atlas of Cancer Signalling NetworkHOXB13
Wikipedia pathwaysHOXB13
Orthology - Evolution
OrthoDB10481
GeneTree (enSembl)ENSG00000159184
Phylogenetic Trees/Animal Genes : TreeFamHOXB13
HOVERGENQ92826
HOGENOMQ92826
Homologs : HomoloGeneHOXB13
Homology/Alignments : Family Browser (UCSC)HOXB13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXB13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXB13
dbVarHOXB13
ClinVarHOXB13
1000_GenomesHOXB13 
Exome Variant ServerHOXB13
ExAC (Exome Aggregation Consortium)HOXB13 (select the gene name)
Genetic variants : HAPMAP10481
Genomic Variants (DGV)HOXB13 [DGVbeta]
DECIPHERHOXB13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOXB13 
Mutations
ICGC Data PortalHOXB13 
TCGA Data PortalHOXB13 
Broad Tumor PortalHOXB13
OASIS PortalHOXB13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXB13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXB13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXB13
DgiDB (Drug Gene Interaction Database)HOXB13
DoCM (Curated mutations)HOXB13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXB13 (select a term)
intoGenHOXB13
Cancer3DHOXB13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604607   
Orphanet903   
MedgenHOXB13
Genetic Testing Registry HOXB13
NextProtQ92826 [Medical]
TSGene10481
GENETestsHOXB13
Target ValidationHOXB13
Huge Navigator HOXB13 [HugePedia]
snp3D : Map Gene to Disease10481
BioCentury BCIQHOXB13
ClinGenHOXB13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10481
Chemical/Pharm GKB GenePA29388
Clinical trialHOXB13
Miscellaneous
canSAR (ICR)HOXB13 (select the gene name)
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXB13
EVEXHOXB13
GoPubMedHOXB13
iHOPHOXB13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:12:05 CEST 2017

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