Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HOXB7 (homeobox B7)

Identity

Alias_namesHOX2
HOX2C
homeo box B7
Other aliasHHO.C1
Hox-2.3
HGNC (Hugo) HOXB7
LocusID (NCBI) 3217
Atlas_Id 40851
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 46684595 and ends at 46688383 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXB7   5118
Cards
Entrez_Gene (NCBI)HOXB7  3217  homeobox B7
AliasesHHO.C1; HOX2; HOX2C; Hox-2.3
GeneCards (Weizmann)HOXB7
Ensembl hg19 (Hinxton)ENSG00000260027 [Gene_View]  chr17:46684595-46688383 [Contig_View]  HOXB7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000260027 [Gene_View]  chr17:46684595-46688383 [Contig_View]  HOXB7 [Vega]
ICGC DataPortalENSG00000260027
TCGA cBioPortalHOXB7
AceView (NCBI)HOXB7
Genatlas (Paris)HOXB7
WikiGenes3217
SOURCE (Princeton)HOXB7
Genetics Home Reference (NIH)HOXB7
Genomic and cartography
GoldenPath hg19 (UCSC)HOXB7  -     chr17:46684595-46688383 -  17q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXB7  -     17q21.32   [Description]    (hg38-Dec_2013)
EnsemblHOXB7 - 17q21.32 [CytoView hg19]  HOXB7 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIHOXB7 [Mapview hg19]  HOXB7 [Mapview hg38]
OMIM142962   
Gene and transcription
Genbank (Entrez)AK223249 AK290653 BC015345 BG118354 BM923808
RefSeq transcript (Entrez)NM_004502
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)HOXB7
Cluster EST : UnigeneHs.436181 [ NCBI ]
CGAP (NCI)Hs.436181
Alternative Splicing GalleryENSG00000260027
Gene ExpressionHOXB7 [ NCBI-GEO ]   HOXB7 [ EBI - ARRAY_EXPRESS ]   HOXB7 [ SEEK ]   HOXB7 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXB7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3217
GTEX Portal (Tissue expression)HOXB7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09629   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09629  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09629
Splice isoforms : SwissVarP09629
PhosPhoSitePlusP09629
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXB7
DMDM Disease mutations3217
Blocks (Seattle)HOXB7
SuperfamilyP09629
Human Protein AtlasENSG00000260027
Peptide AtlasP09629
HPRD00850
IPIIPI00297418   IPI01021058   IPI00980548   
Protein Interaction databases
DIP (DOE-UCLA)P09629
IntAct (EBI)P09629
FunCoupENSG00000260027
BioGRIDHOXB7
STRING (EMBL)HOXB7
ZODIACHOXB7
Ontologies - Pathways
QuickGOP09629
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  anterior/posterior pattern specification  myeloid cell differentiation  sequence-specific DNA binding  embryonic skeletal system morphogenesis  positive regulation of branching involved in ureteric bud morphogenesis  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  anterior/posterior pattern specification  myeloid cell differentiation  sequence-specific DNA binding  embryonic skeletal system morphogenesis  positive regulation of branching involved in ureteric bud morphogenesis  
NDEx NetworkHOXB7
Atlas of Cancer Signalling NetworkHOXB7
Wikipedia pathwaysHOXB7
Orthology - Evolution
OrthoDB3217
GeneTree (enSembl)ENSG00000260027
Phylogenetic Trees/Animal Genes : TreeFamHOXB7
HOVERGENP09629
HOGENOMP09629
Homologs : HomoloGeneHOXB7
Homology/Alignments : Family Browser (UCSC)HOXB7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXB7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXB7
dbVarHOXB7
ClinVarHOXB7
1000_GenomesHOXB7 
Exome Variant ServerHOXB7
ExAC (Exome Aggregation Consortium)HOXB7 (select the gene name)
Genetic variants : HAPMAP3217
Genomic Variants (DGV)HOXB7 [DGVbeta]
DECIPHER (Syndromes)17:46684595-46688383  ENSG00000260027
CONAN: Copy Number AnalysisHOXB7 
Mutations
ICGC Data PortalHOXB7 
TCGA Data PortalHOXB7 
Broad Tumor PortalHOXB7
OASIS PortalHOXB7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXB7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXB7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXB7
DgiDB (Drug Gene Interaction Database)HOXB7
DoCM (Curated mutations)HOXB7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXB7 (select a term)
intoGenHOXB7
Cancer3DHOXB7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142962   
Orphanet
MedgenHOXB7
Genetic Testing Registry HOXB7
NextProtP09629 [Medical]
TSGene3217
GENETestsHOXB7
Huge Navigator HOXB7 [HugePedia]
snp3D : Map Gene to Disease3217
BioCentury BCIQHOXB7
ClinGenHOXB7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3217
Chemical/Pharm GKB GenePA29394
Clinical trialHOXB7
Miscellaneous
canSAR (ICR)HOXB7 (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXB7
EVEXHOXB7
GoPubMedHOXB7
iHOPHOXB7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:04:11 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.