Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HOXC-AS3 (HOXC cluster antisense RNA 3)

Identity

Alias_namesHOXC cluster antisense RNA 3 (non-protein coding)
Other alias-
HGNC (Hugo) HOXC-AS3
LocusID (NCBI) 100874365
Atlas_Id 64401
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53983951 and ends at 53985519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXC-AS3   43751
Cards
Entrez_Gene (NCBI)HOXC-AS3  100874365  HOXC cluster antisense RNA 3
Aliases
GeneCards (Weizmann)HOXC-AS3
Ensembl hg19 (Hinxton)ENSG00000251151 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251151 [Gene_View]  chr12:53983951-53985519 [Contig_View]  HOXC-AS3 [Vega]
ICGC DataPortalENSG00000251151
TCGA cBioPortalHOXC-AS3
AceView (NCBI)HOXC-AS3
Genatlas (Paris)HOXC-AS3
WikiGenes100874365
SOURCE (Princeton)HOXC-AS3
Genetics Home Reference (NIH)HOXC-AS3
Genomic and cartography
GoldenPath hg38 (UCSC)HOXC-AS3  -     chr12:53983951-53985519 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXC-AS3  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC-AS3 - 12q13.13 [CytoView hg19]  HOXC-AS3 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC-AS3 [Mapview hg19]  HOXC-AS3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI830498 BC035260 DA651327
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXC-AS3
Cluster EST : UnigeneHs.607141 [ NCBI ]
CGAP (NCI)Hs.607141
Alternative Splicing GalleryENSG00000251151
Gene ExpressionHOXC-AS3 [ NCBI-GEO ]   HOXC-AS3 [ EBI - ARRAY_EXPRESS ]   HOXC-AS3 [ SEEK ]   HOXC-AS3 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXC-AS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874365
GTEX Portal (Tissue expression)HOXC-AS3
Human Protein AtlasENSG00000251151-HOXC-AS3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOXC-AS3
DMDM Disease mutations100874365
Blocks (Seattle)HOXC-AS3
Human Protein Atlas [tissue]ENSG00000251151-HOXC-AS3 [tissue]
Protein Interaction databases
FunCoupENSG00000251151
BioGRIDHOXC-AS3
STRING (EMBL)HOXC-AS3
ZODIACHOXC-AS3
Ontologies - Pathways
Huge Navigator HOXC-AS3 [HugePedia]
snp3D : Map Gene to Disease100874365
BioCentury BCIQHOXC-AS3
ClinGenHOXC-AS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874365
Clinical trialHOXC-AS3
Miscellaneous
canSAR (ICR)HOXC-AS3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXC-AS3
EVEXHOXC-AS3
GoPubMedHOXC-AS3
iHOPHOXC-AS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:16 CET 2017

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