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HOXC10 (homeobox C10)

Identity

Alias_namesHOX3I
homeo box C10
Other alias
HGNC (Hugo) HOXC10
LocusID (NCBI) 3226
Atlas_Id 49868
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 54378946 and ends at 54384062 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HOXC10 (12q13.13) / PYM1 (12q13.2)HOXC10 12q13.13 / WIBG 12q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXC10   5122
Cards
Entrez_Gene (NCBI)HOXC10  3226  homeobox C10
AliasesHOX3I
GeneCards (Weizmann)HOXC10
Ensembl hg19 (Hinxton)ENSG00000180818 [Gene_View]  chr12:54378946-54384062 [Contig_View]  HOXC10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180818 [Gene_View]  chr12:54378946-54384062 [Contig_View]  HOXC10 [Vega]
ICGC DataPortalENSG00000180818
TCGA cBioPortalHOXC10
AceView (NCBI)HOXC10
Genatlas (Paris)HOXC10
WikiGenes3226
SOURCE (Princeton)HOXC10
Genetics Home Reference (NIH)HOXC10
Genomic and cartography
GoldenPath hg19 (UCSC)HOXC10  -     chr12:54378946-54384062 +  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXC10  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblHOXC10 - 12q13.13 [CytoView hg19]  HOXC10 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC10 [Mapview hg19]  HOXC10 [Mapview hg38]
OMIM605560   
Gene and transcription
Genbank (Entrez)AF255675 AK313759 AL558161 BC001293 BT009921
RefSeq transcript (Entrez)NM_017409
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)HOXC10
Cluster EST : UnigeneHs.44276 [ NCBI ]
CGAP (NCI)Hs.44276
Alternative Splicing GalleryENSG00000180818
Gene ExpressionHOXC10 [ NCBI-GEO ]   HOXC10 [ EBI - ARRAY_EXPRESS ]   HOXC10 [ SEEK ]   HOXC10 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3226
GTEX Portal (Tissue expression)HOXC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYD6
Splice isoforms : SwissVarQ9NYD6
PhosPhoSitePlusQ9NYD6
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXC10
DMDM Disease mutations3226
Blocks (Seattle)HOXC10
SuperfamilyQ9NYD6
Human Protein AtlasENSG00000180818
Peptide AtlasQ9NYD6
HPRD05710
IPIIPI00020947   IPI00968197   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYD6
IntAct (EBI)Q9NYD6
FunCoupENSG00000180818
BioGRIDHOXC10
STRING (EMBL)HOXC10
ZODIACHOXC10
Ontologies - Pathways
QuickGOQ9NYD6
Ontology : AmiGOskeletal system development  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  anterior/posterior pattern specification  proximal/distal pattern formation  cyclin-dependent protein kinase activating kinase holoenzyme complex  spinal cord motor neuron cell fate specification  embryonic limb morphogenesis  sequence-specific DNA binding  neuromuscular process  
Ontology : EGO-EBIskeletal system development  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  anterior/posterior pattern specification  proximal/distal pattern formation  cyclin-dependent protein kinase activating kinase holoenzyme complex  spinal cord motor neuron cell fate specification  embryonic limb morphogenesis  sequence-specific DNA binding  neuromuscular process  
NDEx NetworkHOXC10
Atlas of Cancer Signalling NetworkHOXC10
Wikipedia pathwaysHOXC10
Orthology - Evolution
OrthoDB3226
GeneTree (enSembl)ENSG00000180818
Phylogenetic Trees/Animal Genes : TreeFamHOXC10
HOVERGENQ9NYD6
HOGENOMQ9NYD6
Homologs : HomoloGeneHOXC10
Homology/Alignments : Family Browser (UCSC)HOXC10
Gene fusions - Rearrangements
Fusion : MitelmanHOXC10/WIBG [12q13.13/12q13.2]  
Fusion: TCGAHOXC10 12q13.13 WIBG 12q13.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXC10
dbVarHOXC10
ClinVarHOXC10
1000_GenomesHOXC10 
Exome Variant ServerHOXC10
ExAC (Exome Aggregation Consortium)HOXC10 (select the gene name)
Genetic variants : HAPMAP3226
Genomic Variants (DGV)HOXC10 [DGVbeta]
DECIPHER (Syndromes)12:54378946-54384062  ENSG00000180818
CONAN: Copy Number AnalysisHOXC10 
Mutations
ICGC Data PortalHOXC10 
TCGA Data PortalHOXC10 
Broad Tumor PortalHOXC10
OASIS PortalHOXC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXC10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXC10
DgiDB (Drug Gene Interaction Database)HOXC10
DoCM (Curated mutations)HOXC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXC10 (select a term)
intoGenHOXC10
Cancer3DHOXC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605560   
Orphanet
MedgenHOXC10
Genetic Testing Registry HOXC10
NextProtQ9NYD6 [Medical]
TSGene3226
GENETestsHOXC10
Huge Navigator HOXC10 [HugePedia]
snp3D : Map Gene to Disease3226
BioCentury BCIQHOXC10
ClinGenHOXC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3226
Chemical/Pharm GKB GenePA29397
Clinical trialHOXC10
Miscellaneous
canSAR (ICR)HOXC10 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXC10
EVEXHOXC10
GoPubMedHOXC10
iHOPHOXC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:35 CET 2017

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