Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HOXC10 (homeobox C10)

Identity

Other namesHOX3I
HGNC (Hugo) HOXC10
LocusID (NCBI) 3226
Location 12q13.13
Location_base_pair Starts at 54378946 and ends at 54384062 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXC10   5122
Entrez_Gene (NCBI)HOXC10  3226  homeobox C10
Cards
GeneCards (Weizmann)HOXC10
Ensembl (Hinxton)ENSG00000180818 [Gene_View]  chr12:54378946-54384062 [Contig_View]  HOXC10 [Vega]
AceView (NCBI)HOXC10
Genatlas (Paris)HOXC10
SOURCE (Stanford)NM_017409
Genomic and cartography
GoldenPath (UCSC)HOXC10  -  12q13.13   chr12:54378946-54384062 +  12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC10 - 12q13.13 [CytoView]
Mapping of homologs : NCBIHOXC10 [Mapview]
OMIM605560   
Gene and transcription
Genbank (Entrez)AF255675 AK313759 AL558161 BC001293 BT009921
RefSeq transcript (SRS)NM_017409
RefSeq transcript (Entrez)NM_017409
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004078075
Consensus coding sequences : CCDS (NCBI)HOXC10
Cluster EST : UnigeneHs.44276 [ SRS ] Hs.44276 [ NCBI ]
CGAP (NCI)Hs.44276
Alternative Splicing : Fast-db (Paris)GSHG0006703
Alternative Splicing GalleryENSG00000180818
Gene ExpressionHOXC10 [ NCBI-GEO ]   HOXC10 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYD6 (SRS) Q9NYD6 (Uniprot)
NextProtQ9NYD6
With graphics : InterProQ9NYD6
Splice isoforms : SwissVarQ9NYD6(Swissvar)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like   
Related proteins : CluSTrQ9NYD6
Domain families : Pfam (SRS)Homeobox (PF00046)   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM3226
Blocks (Seattle)Q9NYD6
Human Protein AtlasENSG00000180818
HPRD05710
IPIIPI00020947   IPI00968197   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYD6
IntAct (EBI)Q9NYD6
FunCoupENSG00000180818
REACTOMEHOXC10
Protein Interaction Database3226
BioGRIDHOXC10
InParanoidQ9NYD6
Interologous Interaction database Q9NYD6
IntegromeDBHOXC10
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HOXC10
SNP (GeneSNP Utah)HOXC10
SNP : HGBaseHOXC10
Genetic variants : HAPMAPHOXC10
Somatic Mutations in Cancer : COSMICHOXC10 
CONAN: Copy Number AnalysisHOXC10 
Mutations and Diseases : HGMDHOXC10
OMIM605560   
GENETests605560   
Disease Genetic AssociationHOXC10
Huge Navigator HOXC10 [HugePedia]  HOXC10 [HugeCancerGEM]
Genomic VariantsHOXC10  HOXC10 [DGVbeta]
snp3D : Map Gene to Disease3226
General knowledge
Homologs : HomoloGeneHOXC10
Homology/Alignments : Family Browser (UCSC)HOXC10
Phylogenetic Trees/Animal Genes : TreeFamHOXC10
Chemical/Protein Interactions : CTD3226
Chemical/Pharm GKB GenePA29397
Clinical trialHOXC10
Cancer Resource (Charite)ENSG00000180818
Ontology : AmiGOskeletal system development  sequence-specific DNA binding transcription factor activity  transcription, DNA-dependent  positive regulation of cell proliferation  anterior/posterior pattern specification  proximal/distal pattern formation  cyclin-dependent protein kinase activating kinase holoenzyme complex  spinal cord motor neuron cell fate specification  embryonic limb morphogenesis  sequence-specific DNA binding  neuromuscular process  
Ontology : EGO-EBIskeletal system development  sequence-specific DNA binding transcription factor activity  transcription, DNA-dependent  positive regulation of cell proliferation  anterior/posterior pattern specification  proximal/distal pattern formation  cyclin-dependent protein kinase activating kinase holoenzyme complex  spinal cord motor neuron cell fate specification  embryonic limb morphogenesis  sequence-specific DNA binding  neuromuscular process  
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
PubGeneHOXC10
iHOPHOXC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:19:39 CEST 2013
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