Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HOXC11 (homeobox C11)

Identity

Other namesHOX3H
HGNC (Hugo) HOXC11
LocusID (NCBI) 3227
Location 12q13.13
Location_base_pair Starts at 54366910 and ends at 54370203 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXC11   5123
Cards
Entrez_Gene (NCBI)HOXC11  3227  homeobox C11
GeneCards (Weizmann)HOXC11
Ensembl hg19 (Hinxton)ENSG00000123388 [Gene_View]  chr12:54366910-54370203 [Contig_View]  HOXC11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000123388 [Gene_View]  chr12:54366910-54370203 [Contig_View]  HOXC11 [Vega]
ICGC DataPortalENSG00000123388
cBioPortalHOXC11
AceView (NCBI)HOXC11
Genatlas (Paris)HOXC11
WikiGenes3227
SOURCE (Princeton)HOXC11
Genomic and cartography
GoldenPath hg19 (UCSC)HOXC11  -     chr12:54366910-54370203 +  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXC11  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblHOXC11 - 12q13.13 [CytoView hg19]  HOXC11 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC11 [Mapview hg19]  HOXC11 [Mapview hg38]
OMIM605559   
Gene and transcription
Genbank (Entrez)AJ000041 AK291946 BC001543 HQ447392 X99630
RefSeq transcript (Entrez)NM_014212
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004929384
Consensus coding sequences : CCDS (NCBI)HOXC11
Cluster EST : UnigeneHs.127562 [ NCBI ]
CGAP (NCI)Hs.127562
Alternative Splicing : Fast-db (Paris)GSHG0006702
Alternative Splicing GalleryENSG00000123388
Gene ExpressionHOXC11 [ NCBI-GEO ]     HOXC11 [ SEEK ]   HOXC11 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43248 (Uniprot)
NextProtO43248  [Medical]
With graphics : InterProO43248
Splice isoforms : SwissVarO43248 (Swissvar)
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)DUF3528    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Related proteins : CluSTrO43248
Domain families : Pfam (Sanger)DUF3528 (PF12045)    Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam12045    pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations3227
Blocks (Seattle)O43248
Human Protein AtlasENSG00000123388
Peptide AtlasO43248
HPRD09275
IPIIPI00011610   IPI01022231   
Protein Interaction databases
DIP (DOE-UCLA)O43248
IntAct (EBI)O43248
FunCoupENSG00000123388
BioGRIDHOXC11
IntegromeDBHOXC11
STRING (EMBL)HOXC11
Ontologies - Pathways
QuickGOO43248
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  metanephros development  organ induction  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  endoderm development  anterior/posterior pattern specification  proximal/distal pattern formation  embryonic digit morphogenesis  positive regulation of transcription from RNA polymerase II promoter  embryonic skeletal joint morphogenesis  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription  metanephros development  organ induction  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  endoderm development  anterior/posterior pattern specification  proximal/distal pattern formation  embryonic digit morphogenesis  positive regulation of transcription from RNA polymerase II promoter  embryonic skeletal joint morphogenesis  
Protein Interaction DatabaseHOXC11
DoCM (Curated mutations)HOXC11
Wikipedia pathwaysHOXC11
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHOXC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXC11
dbVarHOXC11
ClinVarHOXC11
1000_GenomesHOXC11 
Exome Variant ServerHOXC11
SNP (GeneSNP Utah)HOXC11
SNP : HGBaseHOXC11
Genetic variants : HAPMAPHOXC11
Genomic VariantsHOXC11  HOXC11 [DGVbeta]
Mutations
ICGC Data PortalENSG00000123388 
Cancer Gene: CensusHOXC11 
Somatic Mutations in Cancer : COSMICHOXC11 
CONAN: Copy Number AnalysisHOXC11 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:54366910-54370203
Mutations and Diseases : HGMDHOXC11
OMIM605559   
MedgenHOXC11
NextProtO43248 [Medical]
GENETestsHOXC11
Disease Genetic AssociationHOXC11
Huge Navigator HOXC11 [HugePedia]  HOXC11 [HugeCancerGEM]
snp3D : Map Gene to Disease3227
DGIdb (Drug Gene Interaction db)HOXC11
General knowledge
Homologs : HomoloGeneHOXC11
Homology/Alignments : Family Browser (UCSC)HOXC11
Phylogenetic Trees/Animal Genes : TreeFamHOXC11
Chemical/Protein Interactions : CTD3227
Chemical/Pharm GKB GenePA29398
Clinical trialHOXC11
Cancer Resource (Charite)ENSG00000123388
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
CoreMineHOXC11
GoPubMedHOXC11
iHOPHOXC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 22:02:57 CET 2014

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