Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HOXC11 (homeobox C11)

Identity

Other namesHOX3H
MGC4906
HGNC (Hugo) HOXC11
Location 12q13.13
Location_base_pair Starts at 52653177 and ends at 52656470 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXC11   5123
Entrez_Gene (NCBI)HOXC11  3227  homeobox C11
Cards
GeneCards (Weizmann)HOXC11
Ensembl (Hinxton)ENSG00000123388 [Gene_View]  HOXC11 [Vega]
AceView (NCBI)HOXC11
Genatlas (Paris)HOXC11
euGene (Indiana)3227
SOURCE (Stanford)NM_014212
Gene Expression (Array Express) ENSG00000123388
Genomic and cartography
GoldenPath (UCSC)HOXC11  -  12q13.13   chr12:52653177-52656470 +  12q13.13   [Description]    (hg18-March_2006)
EnsemblHOXC11 - 12q13.13 [CytoView]
Mapping of homologs : NCBIHOXC11 [Mapview]
OMIM605559   
Gene and transcription
Gene : Genbank (Entrez)AJ000041 AK291946 BC001543 CR602963 X99630
Reference sequence (RefSeq transcript) :SRSNM_014212
Reference transcript : EntrezNM_014212
RefSeq genomic : SRSAC_000055 AC_000144 NC_000012 NT_029419 NW_001838059 NW_925395
RefSeq genomic : EntrezAC_000055 AC_000144 NC_000012 NT_029419 NW_001838059 NW_925395
Consensus coding sequences : CCDS NCBIHOXC11
Cluster EST : UnigeneHs.127562 [ SRS ] Hs.127562 [ NCBI ]
Alternative Splicing : Fast-db (Paris)7963
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO43248 (SRS) O43248 (Expasy) O43248 (Uniprot)
With graphics : InterProO43248
Splice isoforms : VarSplice FASTAO43248(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domain pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeobox    Homeobox_CS    Homeobox_region    Homeodomain-like    Homeodomain-rel   
Domains : Interpro (EBI)Homeobox    Homeobox_CS    Homeobox_region    Homeodomain-like    Homeodomain-rel   
Related proteins : CluSTrO43248
Domain families : Pfam SRSHomeobox (PF00046)   
Domain families : Pfam SangerHomeobox (PF00046)   
Domain families : Pfam NCBIpfam00046   
Domain families : Smart EMBLHOX (SM00389)  
Blocks (Seattle)O43248
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD09275
Protein Interaction databases
DIP (DOE-UCLA)O43248
IntAct (EBI)O43248
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIHOXC11
SNP : GeneSNP UtahHOXC11
SNP : HGBaseHOXC11
Genetic variants : HAPMAPHOXC11
Cancer Gene: CensusHOXC11 
Somatic Mutations in Cancer : COSMICHOXC11 
Translocation Breakpoints in Cancer : TICdbskeletal 
Mutations and Diseases : HGMDHOXC11
Hereditary diseases : OMIM605559   
Hereditary diseases : GENETests605559   
Diseases : Genetic AssociationHOXC11
General knowledge
Homologs : HomoloGeneHOXC11
Homology/Alignments : Family Browser UCSCHOXC11
Phylogenetic Trees/Animal Genes : TreeFamHOXC11
Chemical/Protein Interactions : CTD3227
Keywords Ontology : AmiGOskeletal system development  metanephros development  induction of an organ  transcription factor activity  RNA polymerase II transcription factor activity  nucleus  regulation of transcription, DNA-dependent  multicellular organismal development  endoderm development  anterior/posterior pattern formation  proximal/distal pattern formation  embryonic digit morphogenesis  sequence-specific DNA binding  
Keywords Ontology : EGO-EBIskeletal system development  metanephros development  induction of an organ  transcription factor activity  RNA polymerase II transcription factor activity  nucleus  regulation of transcription, DNA-dependent  multicellular organismal development  endoderm development  anterior/posterior pattern formation  proximal/distal pattern formation  embryonic digit morphogenesis  sequence-specific DNA binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesHOXC11 Related clones (RZPD - Berlin)
Literature
PubMed11 Pubmed reference(s) in Entrez
PubGeneHOXC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:28:48 CET 2010
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