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HOXC12 (homeobox C12)

Identity

Alias_namesHOX3
HOX3F
HOC3F
homeo box C12
Other alias
HGNC (Hugo) HOXC12
LocusID (NCBI) 3228
Atlas_Id 64395
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53954868 and ends at 53956606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOXC12 (12q13.13) / NUP98 (11p15.4)NUP98 (11p15.4) / HOXC12 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXC12   5124
Cards
Entrez_Gene (NCBI)HOXC12  3228  homeobox C12
AliasesHOC3F; HOX3; HOX3F
GeneCards (Weizmann)HOXC12
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:53954868-53956606 [Contig_View]  HOXC12 [Vega]
TCGA cBioPortalHOXC12
AceView (NCBI)HOXC12
Genatlas (Paris)HOXC12
WikiGenes3228
SOURCE (Princeton)HOXC12
Genetics Home Reference (NIH)HOXC12
Genomic and cartography
GoldenPath hg38 (UCSC)HOXC12  -     chr12:53954868-53956606 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXC12  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC12 - 12q13.13 [CytoView hg19]  HOXC12 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC12 [Mapview hg19]  HOXC12 [Mapview hg38]
OMIM142975   
Gene and transcription
Genbank (Entrez)AK125569 BC160004 X99631
RefSeq transcript (Entrez)NM_173860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXC12
Cluster EST : UnigeneHs.587727 [ NCBI ]
CGAP (NCI)Hs.587727
Gene ExpressionHOXC12 [ NCBI-GEO ]   HOXC12 [ EBI - ARRAY_EXPRESS ]   HOXC12 [ SEEK ]   HOXC12 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3228
GTEX Portal (Tissue expression)HOXC12
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31275   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31275  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31275
Splice isoforms : SwissVarP31275
PhosPhoSitePlusP31275
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXC12
DMDM Disease mutations3228
Blocks (Seattle)HOXC12
SuperfamilyP31275
Peptide AtlasP31275
HPRD00861
IPIIPI00010758   
Protein Interaction databases
DIP (DOE-UCLA)P31275
IntAct (EBI)P31275
BioGRIDHOXC12
STRING (EMBL)HOXC12
ZODIACHOXC12
Ontologies - Pathways
QuickGOP31275
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  sequence-specific DNA binding  
NDEx NetworkHOXC12
Atlas of Cancer Signalling NetworkHOXC12
Wikipedia pathwaysHOXC12
Orthology - Evolution
OrthoDB3228
Phylogenetic Trees/Animal Genes : TreeFamHOXC12
HOVERGENP31275
HOGENOMP31275
Homologs : HomoloGeneHOXC12
Homology/Alignments : Family Browser (UCSC)HOXC12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXC12
dbVarHOXC12
ClinVarHOXC12
1000_GenomesHOXC12 
Exome Variant ServerHOXC12
ExAC (Exome Aggregation Consortium)HOXC12 (select the gene name)
Genetic variants : HAPMAP3228
Genomic Variants (DGV)HOXC12 [DGVbeta]
DECIPHERHOXC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOXC12 
Mutations
ICGC Data PortalHOXC12 
TCGA Data PortalHOXC12 
Broad Tumor PortalHOXC12
OASIS PortalHOXC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXC12
DgiDB (Drug Gene Interaction Database)HOXC12
DoCM (Curated mutations)HOXC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXC12 (select a term)
intoGenHOXC12
Cancer3DHOXC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142975   
Orphanet
MedgenHOXC12
Genetic Testing Registry HOXC12
NextProtP31275 [Medical]
TSGene3228
GENETestsHOXC12
Target ValidationHOXC12
Huge Navigator HOXC12 [HugePedia]
snp3D : Map Gene to Disease3228
BioCentury BCIQHOXC12
ClinGenHOXC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3228
Chemical/Pharm GKB GenePA29399
Clinical trialHOXC12
Miscellaneous
canSAR (ICR)HOXC12 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXC12
EVEXHOXC12
GoPubMedHOXC12
iHOPHOXC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:42 CEST 2017

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