Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HOXC13-AS (HOXC13 antisense RNA)

Identity

Alias_namesHOXC-AS5
HOXC cluster antisense RNA 5 (non-protein coding)
HOXC cluster antisense RNA 5
Other alias
HGNC (Hugo) HOXC13-AS
LocusID (NCBI) 100874366
Atlas_Id 64396
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 54329112 and ends at 54333427 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXC13-AS   43753
Cards
Entrez_Gene (NCBI)HOXC13-AS  100874366  HOXC13 antisense RNA
AliasesHOXC-AS5
GeneCards (Weizmann)HOXC13-AS
Ensembl hg19 (Hinxton)ENSG00000249641 [Gene_View]  chr12:54329112-54333427 [Contig_View]  HOXC13-AS [Vega]
Ensembl hg38 (Hinxton)ENSG00000249641 [Gene_View]  chr12:54329112-54333427 [Contig_View]  HOXC13-AS [Vega]
ICGC DataPortalENSG00000249641
TCGA cBioPortalHOXC13-AS
AceView (NCBI)HOXC13-AS
Genatlas (Paris)HOXC13-AS
WikiGenes100874366
SOURCE (Princeton)HOXC13-AS
Genetics Home Reference (NIH)HOXC13-AS
Genomic and cartography
GoldenPath hg19 (UCSC)HOXC13-AS  -     chr12:54329112-54333427 -  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXC13-AS  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblHOXC13-AS - 12q13.13 [CytoView hg19]  HOXC13-AS - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC13-AS [Mapview hg19]  HOXC13-AS [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE905258 BX097788 BX363129 CN364530 HG504797
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_033026 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)HOXC13-AS
Cluster EST : UnigeneHs.547385 [ NCBI ]
CGAP (NCI)Hs.547385
Alternative Splicing GalleryENSG00000249641
Gene ExpressionHOXC13-AS [ NCBI-GEO ]   HOXC13-AS [ EBI - ARRAY_EXPRESS ]   HOXC13-AS [ SEEK ]   HOXC13-AS [ MEM ]
Gene Expression Viewer (FireBrowse)HOXC13-AS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874366
GTEX Portal (Tissue expression)HOXC13-AS
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HOXC13-AS
DMDM Disease mutations100874366
Blocks (Seattle)HOXC13-AS
Human Protein AtlasENSG00000249641
Protein Interaction databases
FunCoupENSG00000249641
BioGRIDHOXC13-AS
STRING (EMBL)HOXC13-AS
ZODIACHOXC13-AS
Ontologies - Pathways
Huge Navigator HOXC13-AS [HugePedia]
snp3D : Map Gene to Disease100874366
BioCentury BCIQHOXC13-AS
ClinGenHOXC13-AS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874366
Clinical trialHOXC13-AS
Miscellaneous
canSAR (ICR)HOXC13-AS (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXC13-AS
EVEXHOXC13-AS
GoPubMedHOXC13-AS
iHOPHOXC13-AS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:06 CET 2017

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