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HOXC4 (homeobox C4)

Identity

Alias_namesHOX3
HOX3E
homeo box C4
Other aliascp19
HGNC (Hugo) HOXC4
LocusID (NCBI) 3221
Atlas_Id 54368
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 54016852 and ends at 54056030 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOXC4 (12q13.13) / ADAMTS20 (12q12)HOXC4 (12q13.13) / HOXC9 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXC4   5126
Cards
Entrez_Gene (NCBI)HOXC4  3221  homeobox C4
AliasesHOX3; HOX3E; cp19
GeneCards (Weizmann)HOXC4
Ensembl hg19 (Hinxton)ENSG00000198353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198353 [Gene_View]  chr12:54016852-54056030 [Contig_View]  HOXC4 [Vega]
ICGC DataPortalENSG00000198353
TCGA cBioPortalHOXC4
AceView (NCBI)HOXC4
Genatlas (Paris)HOXC4
WikiGenes3221
SOURCE (Princeton)HOXC4
Genetics Home Reference (NIH)HOXC4
Genomic and cartography
GoldenPath hg38 (UCSC)HOXC4  -     chr12:54016852-54056030 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXC4  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC4 - 12q13.13 [CytoView hg19]  HOXC4 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC4 [Mapview hg19]  HOXC4 [Mapview hg38]
OMIM142974   
Gene and transcription
Genbank (Entrez)AA331371 AA621965 AA805317 AI200419 BC050442
RefSeq transcript (Entrez)NM_014620 NM_153633
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXC4
Cluster EST : UnigeneHs.549040 [ NCBI ]
CGAP (NCI)Hs.549040
Alternative Splicing GalleryENSG00000198353
Gene ExpressionHOXC4 [ NCBI-GEO ]   HOXC4 [ EBI - ARRAY_EXPRESS ]   HOXC4 [ SEEK ]   HOXC4 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3221
GTEX Portal (Tissue expression)HOXC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09017   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09017  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09017
Splice isoforms : SwissVarP09017
PhosPhoSitePlusP09017
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_antennapedia    Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXC4
DMDM Disease mutations3221
Blocks (Seattle)HOXC4
SuperfamilyP09017
Human Protein AtlasENSG00000198353
Peptide AtlasP09017
HPRD00860
IPIIPI00295561   IPI00848120   IPI00981603   
Protein Interaction databases
DIP (DOE-UCLA)P09017
IntAct (EBI)P09017
FunCoupENSG00000198353
BioGRIDHOXC4
STRING (EMBL)HOXC4
ZODIACHOXC4
Ontologies - Pathways
QuickGOP09017
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anterior/posterior pattern specification  sequence-specific DNA binding  embryonic organ morphogenesis  cartilage development  HMG box domain binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  anterior/posterior pattern specification  sequence-specific DNA binding  embryonic organ morphogenesis  cartilage development  HMG box domain binding  
NDEx NetworkHOXC4
Atlas of Cancer Signalling NetworkHOXC4
Wikipedia pathwaysHOXC4
Orthology - Evolution
OrthoDB3221
GeneTree (enSembl)ENSG00000198353
Phylogenetic Trees/Animal Genes : TreeFamHOXC4
HOVERGENP09017
HOGENOMP09017
Homologs : HomoloGeneHOXC4
Homology/Alignments : Family Browser (UCSC)HOXC4
Gene fusions - Rearrangements
Fusion : MitelmanHOXC4/ADAMTS20 [12q13.13/12q12]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXC4
dbVarHOXC4
ClinVarHOXC4
1000_GenomesHOXC4 
Exome Variant ServerHOXC4
ExAC (Exome Aggregation Consortium)HOXC4 (select the gene name)
Genetic variants : HAPMAP3221
Genomic Variants (DGV)HOXC4 [DGVbeta]
DECIPHERHOXC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOXC4 
Mutations
ICGC Data PortalHOXC4 
TCGA Data PortalHOXC4 
Broad Tumor PortalHOXC4
OASIS PortalHOXC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXC4
DgiDB (Drug Gene Interaction Database)HOXC4
DoCM (Curated mutations)HOXC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXC4 (select a term)
intoGenHOXC4
Cancer3DHOXC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142974   
Orphanet
MedgenHOXC4
Genetic Testing Registry HOXC4
NextProtP09017 [Medical]
TSGene3221
GENETestsHOXC4
Target ValidationHOXC4
Huge Navigator HOXC4 [HugePedia]
snp3D : Map Gene to Disease3221
BioCentury BCIQHOXC4
ClinGenHOXC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3221
Chemical/Pharm GKB GenePA29401
Clinical trialHOXC4
Miscellaneous
canSAR (ICR)HOXC4 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXC4
EVEXHOXC4
GoPubMedHOXC4
iHOPHOXC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:55:39 CEST 2017

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