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HOXC8 (homeobox C8)

Identity

Other namesHOX3
HOX3A
HGNC (Hugo) HOXC8
LocusID (NCBI) 3224
Location 12q13.13
Location_base_pair Starts at 54402890 and ends at 54406545 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXC8   5129
Cards
Entrez_Gene (NCBI)HOXC8  3224  homeobox C8
GeneCards (Weizmann)HOXC8
Ensembl (Hinxton) [Gene_View]  chr12:54402890-54406545 [Contig_View]  HOXC8 [Vega]
cBioPortalHOXC8
AceView (NCBI)HOXC8
Genatlas (Paris)HOXC8
WikiGenes3224
SOURCE (Princeton)NM_022658
Genomic and cartography
GoldenPath (UCSC)HOXC8  -  12q13.13   chr12:54402890-54406545 +  12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC8 - 12q13.13 [CytoView]
Mapping of homologs : NCBIHOXC8 [Mapview]
OMIM142970   
Gene and transcription
Genbank (Entrez)AK290959 BC053898 BU156590 BU618342 X99680
RefSeq transcript (Entrez)NM_022658
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004929384
Consensus coding sequences : CCDS (NCBI)HOXC8
Cluster EST : UnigeneHs.664500 [ NCBI ]
CGAP (NCI)Hs.664500
Alternative Splicing : Fast-db (Paris)GSHG0006705
Gene ExpressionHOXC8 [ NCBI-GEO ]     HOXC8 [ SEEK ]   HOXC8 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31273 (Uniprot)
NextProtP31273  [Medical]
With graphics : InterProP31273
Splice isoforms : SwissVarP31273 (Swissvar)
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_Antennapedia_CS [organisation]   Homeobox_CS [organisation]   Homeobox_dom [organisation]   Homeobox_metazoa [organisation]   Homeodomain-like [organisation]   HTH_motif [organisation]  
Related proteins : CluSTrP31273
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations3224
Blocks (Seattle)P31273
Peptide AtlasP31273
HPRD00856
IPIIPI00010756   
Protein Interaction databases
DIP (DOE-UCLA)P31273
IntAct (EBI)P31273
BioGRIDHOXC8
InParanoidP31273
Interologous Interaction database P31273
IntegromeDBHOXC8
STRING (EMBL)HOXC8
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription regulatory region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  nucleolus  transcription, DNA-templated  anterior/posterior pattern specification  microtubule cytoskeleton  neuron differentiation  skeletal system morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription regulatory region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  nucleolus  transcription, DNA-templated  anterior/posterior pattern specification  microtubule cytoskeleton  neuron differentiation  skeletal system morphogenesis  
Protein Interaction DatabaseHOXC8
Wikipedia pathwaysHOXC8
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HOXC8
snp3D : Map Gene to Disease3224
SNP (GeneSNP Utah)HOXC8
SNP : HGBaseHOXC8
Genetic variants : HAPMAPHOXC8
Exome VariantHOXC8
1000_GenomesHOXC8 
Somatic Mutations in Cancer : COSMICHOXC8 
CONAN: Copy Number AnalysisHOXC8 
Mutations and Diseases : HGMDHOXC8
Mutations and Diseases : intOGenHOXC8
Genomic VariantsHOXC8  HOXC8 [DGVbeta]
dbVarHOXC8
ClinVarHOXC8
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM142970   
MedgenHOXC8
GENETestsHOXC8
Disease Genetic AssociationHOXC8
Huge Navigator HOXC8 [HugePedia]  HOXC8 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneHOXC8
Homology/Alignments : Family Browser (UCSC)HOXC8
Phylogenetic Trees/Animal Genes : TreeFamHOXC8
Chemical/Protein Interactions : CTD3224
Chemical/Pharm GKB GenePA29404
Clinical trialHOXC8
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineHOXC8
iHOPHOXC8
OncoSearchHOXC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:49:51 CEST 2014

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