Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HOXC8 (homeobox C8)

Identity

Other namesHOX3
HOX3A
HGNC (Hugo) HOXC8
LocusID (NCBI) 3224
Location 12q13.13
Location_base_pair Starts at 54402890 and ends at 54406545 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HOXC8   5129
Entrez_Gene (NCBI)HOXC8  3224  homeobox C8
Cards
GeneCards (Weizmann)HOXC8
Ensembl (Hinxton)ENSG00000037965 [Gene_View]  chr12:54402890-54406545 [Contig_View]  HOXC8 [Vega]
AceView (NCBI)HOXC8
Genatlas (Paris)HOXC8
SOURCE (Stanford)NM_022658
Genomic and cartography
GoldenPath (UCSC)HOXC8  -  12q13.13   chr12:54402890-54406545 +  12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC8 - 12q13.13 [CytoView]
Mapping of homologs : NCBIHOXC8 [Mapview]
OMIM142970   
Gene and transcription
Genbank (Entrez)AK290959 BC053898 BU156590 BU618342 X99680
RefSeq transcript (SRS)NM_022658
RefSeq transcript (Entrez)NM_022658
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004078075
Consensus coding sequences : CCDS (NCBI)HOXC8
Cluster EST : UnigeneHs.664500 [ SRS ] Hs.664500 [ NCBI ]
CGAP (NCI)Hs.664500
Alternative Splicing : Fast-db (Paris)GSHG0006705
Alternative Splicing GalleryENSG00000037965
Gene ExpressionHOXC8 [ NCBI-GEO ]   HOXC8 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31273 (SRS) P31273 (Uniprot)
NextProtP31273
With graphics : InterProP31273
Splice isoforms : SwissVarP31273(Swissvar)
Domaine pattern : Prosite (SRS)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domaine pattern : Prosite (Expaxy)ANTENNAPEDIA (PS00032)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like    HTH_motif   
Domains : Interpro (EBI)Homeobox_Antennapedia_CS    Homeobox_CS    Homeobox_metazoa    Homeodomain    Homeodomain-like    HTH_motif   
Related proteins : CluSTrP31273
Domain families : Pfam (SRS)Homeobox (PF00046)   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM3224
Blocks (Seattle)P31273
Human Protein AtlasENSG00000037965
HPRD00856
IPIIPI00010756   
Protein Interaction databases
DIP (DOE-UCLA)P31273
IntAct (EBI)P31273
FunCoupENSG00000037965
REACTOMEHOXC8
Protein Interaction Database3224
BioGRIDHOXC8
InParanoidP31273
Interologous Interaction database P31273
IntegromeDBHOXC8
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HOXC8
SNP (GeneSNP Utah)HOXC8
SNP : HGBaseHOXC8
Genetic variants : HAPMAPHOXC8
Somatic Mutations in Cancer : COSMICHOXC8 
CONAN: Copy Number AnalysisHOXC8 
Mutations and Diseases : HGMDHOXC8
OMIM142970   
GENETests142970   
Disease Genetic AssociationHOXC8
Huge Navigator HOXC8 [HugePedia]  HOXC8 [HugeCancerGEM]
Genomic VariantsHOXC8  HOXC8 [DGVbeta]
snp3D : Map Gene to Disease3224
General knowledge
Homologs : HomoloGeneHOXC8
Homology/Alignments : Family Browser (UCSC)HOXC8
Phylogenetic Trees/Animal Genes : TreeFamHOXC8
Chemical/Protein Interactions : CTD3224
Chemical/Pharm GKB GenePA29404
Clinical trialHOXC8
Cancer Resource (Charite)ENSG00000037965
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription regulatory region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  multicellular organismal development  anterior/posterior pattern specification  neuron differentiation  skeletal system morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription regulatory region sequence-specific DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  multicellular organismal development  anterior/posterior pattern specification  neuron differentiation  skeletal system morphogenesis  
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
PubGeneHOXC8
iHOPHOXC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:31:15 CEST 2013
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