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HOXC9 (homeobox C9)

Identity

Alias_namesHOX3
HOX3B
homeo box C9
Other alias
HGNC (Hugo) HOXC9
LocusID (NCBI) 3225
Atlas_Id 55191
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 54000119 and ends at 54003336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COPG1 (3q21.3) / HOXC9 (12q13.13)HOXC4 (12q13.13) / HOXC9 (12q13.13)HOXC9 (12q13.13) / PYM1 (12q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXC9   5130
Cards
Entrez_Gene (NCBI)HOXC9  3225  homeobox C9
AliasesHOX3; HOX3B
GeneCards (Weizmann)HOXC9
Ensembl hg19 (Hinxton)ENSG00000180806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180806 [Gene_View]  chr12:54000119-54003336 [Contig_View]  HOXC9 [Vega]
ICGC DataPortalENSG00000180806
TCGA cBioPortalHOXC9
AceView (NCBI)HOXC9
Genatlas (Paris)HOXC9
WikiGenes3225
SOURCE (Princeton)HOXC9
Genetics Home Reference (NIH)HOXC9
Genomic and cartography
GoldenPath hg38 (UCSC)HOXC9  -     chr12:54000119-54003336 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HOXC9  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblHOXC9 - 12q13.13 [CytoView hg19]  HOXC9 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIHOXC9 [Mapview hg19]  HOXC9 [Mapview hg38]
OMIM142971   
Gene and transcription
Genbank (Entrez)AK000445 AK315194 BC021265 BC032769 BC053894
RefSeq transcript (Entrez)NM_006897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HOXC9
Cluster EST : UnigeneHs.658823 [ NCBI ]
CGAP (NCI)Hs.658823
Alternative Splicing GalleryENSG00000180806
Gene ExpressionHOXC9 [ NCBI-GEO ]   HOXC9 [ EBI - ARRAY_EXPRESS ]   HOXC9 [ SEEK ]   HOXC9 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3225
GTEX Portal (Tissue expression)HOXC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31274   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31274  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31274
Splice isoforms : SwissVarP31274
PhosPhoSitePlusP31274
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Hox9_activation_N    HXA9/HXB9/HXC9   
Domain families : Pfam (Sanger)Homeobox (PF00046)    Hox9_act (PF04617)   
Domain families : Pfam (NCBI)pfam00046    pfam04617   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXC9
DMDM Disease mutations3225
Blocks (Seattle)HOXC9
PDB (SRS)2LP0    2MSY   
PDB (PDBSum)2LP0    2MSY   
PDB (IMB)2LP0    2MSY   
PDB (RSDB)2LP0    2MSY   
Structural Biology KnowledgeBase2LP0    2MSY   
SCOP (Structural Classification of Proteins)2LP0    2MSY   
CATH (Classification of proteins structures)2LP0    2MSY   
SuperfamilyP31274
Human Protein AtlasENSG00000180806
Peptide AtlasP31274
HPRD00857
IPIIPI00644080   
Protein Interaction databases
DIP (DOE-UCLA)P31274
IntAct (EBI)P31274
FunCoupENSG00000180806
BioGRIDHOXC9
STRING (EMBL)HOXC9
ZODIACHOXC9
Ontologies - Pathways
QuickGOP31274
Ontology : AmiGOprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  anterior/posterior pattern specification  aggresome  sequence-specific DNA binding  embryonic skeletal system morphogenesis  
Ontology : EGO-EBIprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  anterior/posterior pattern specification  aggresome  sequence-specific DNA binding  embryonic skeletal system morphogenesis  
NDEx NetworkHOXC9
Atlas of Cancer Signalling NetworkHOXC9
Wikipedia pathwaysHOXC9
Orthology - Evolution
OrthoDB3225
GeneTree (enSembl)ENSG00000180806
Phylogenetic Trees/Animal Genes : TreeFamHOXC9
HOVERGENP31274
HOGENOMP31274
Homologs : HomoloGeneHOXC9
Homology/Alignments : Family Browser (UCSC)HOXC9
Gene fusions - Rearrangements
Fusion : MitelmanHOXC9/WIBG [12q13.13/12q13.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXC9
dbVarHOXC9
ClinVarHOXC9
1000_GenomesHOXC9 
Exome Variant ServerHOXC9
ExAC (Exome Aggregation Consortium)HOXC9 (select the gene name)
Genetic variants : HAPMAP3225
Genomic Variants (DGV)HOXC9 [DGVbeta]
DECIPHERHOXC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHOXC9 
Mutations
ICGC Data PortalHOXC9 
TCGA Data PortalHOXC9 
Broad Tumor PortalHOXC9
OASIS PortalHOXC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXC9
DgiDB (Drug Gene Interaction Database)HOXC9
DoCM (Curated mutations)HOXC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXC9 (select a term)
intoGenHOXC9
Cancer3DHOXC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142971   
Orphanet
MedgenHOXC9
Genetic Testing Registry HOXC9
NextProtP31274 [Medical]
TSGene3225
GENETestsHOXC9
Huge Navigator HOXC9 [HugePedia]
snp3D : Map Gene to Disease3225
BioCentury BCIQHOXC9
ClinGenHOXC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3225
Chemical/Pharm GKB GenePA29405
Clinical trialHOXC9
Miscellaneous
canSAR (ICR)HOXC9 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXC9
EVEXHOXC9
GoPubMedHOXC9
iHOPHOXC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:20 CEST 2017

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