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HOXD1 (homeobox D1)

Identity

Alias_namesHOX4
HOX4G
homeo box D1
Other aliasHox-4.7
HGNC (Hugo) HOXD1
LocusID (NCBI) 3231
Atlas_Id 51756
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 177053307 and ends at 177055635 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ETV6 (12p13.2) / HOXD1 (2q31.1)HOXD1 (2q31.1) / ETV6 (12p13.2)HOXD1 (2q31.1) / KAT6A (8p11.21)
HOXD1 (2q31.1) / KMT2A (11q23.3)HOXD1 (2q31.1) / MECOM (3q26.2)HOXD1 (2q31.1) / NUP98 (11p15.4)
HOXD1 (2q31.1) / SENP6 (6q14.1)KAT6A (8p11.21) / HOXD1 (2q31.1)KMT2A (11q23.3) / HOXD1 (2q31.1)
MECOM (3q26.2) / HOXD1 (2q31.1)NUP98 (11p15.4) / HOXD1 (2q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXD1   5132
Cards
Entrez_Gene (NCBI)HOXD1  3231  homeobox D1
AliasesHOX4; HOX4G; Hox-4.7
GeneCards (Weizmann)HOXD1
Ensembl hg19 (Hinxton)ENSG00000128645 [Gene_View]  chr2:177053307-177055635 [Contig_View]  HOXD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128645 [Gene_View]  chr2:177053307-177055635 [Contig_View]  HOXD1 [Vega]
ICGC DataPortalENSG00000128645
TCGA cBioPortalHOXD1
AceView (NCBI)HOXD1
Genatlas (Paris)HOXD1
WikiGenes3231
SOURCE (Princeton)HOXD1
Genetics Home Reference (NIH)HOXD1
Genomic and cartography
GoldenPath hg19 (UCSC)HOXD1  -     chr2:177053307-177055635 +  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXD1  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblHOXD1 - 2q31.1 [CytoView hg19]  HOXD1 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIHOXD1 [Mapview hg19]  HOXD1 [Mapview hg38]
OMIM142987   
Gene and transcription
Genbank (Entrez)AF241528 AK314120 BC014477 BC028190 DQ892237
RefSeq transcript (Entrez)NM_024501
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)HOXD1
Cluster EST : UnigeneHs.83465 [ NCBI ]
CGAP (NCI)Hs.83465
Alternative Splicing GalleryENSG00000128645
Gene ExpressionHOXD1 [ NCBI-GEO ]   HOXD1 [ EBI - ARRAY_EXPRESS ]   HOXD1 [ SEEK ]   HOXD1 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3231
GTEX Portal (Tissue expression)HOXD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZZ0
Splice isoforms : SwissVarQ9GZZ0
PhosPhoSitePlusQ9GZZ0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXD1
DMDM Disease mutations3231
Blocks (Seattle)HOXD1
SuperfamilyQ9GZZ0
Human Protein AtlasENSG00000128645
Peptide AtlasQ9GZZ0
HPRD00870
IPIIPI00001551   IPI00217854   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZZ0
IntAct (EBI)Q9GZZ0
FunCoupENSG00000128645
BioGRIDHOXD1
STRING (EMBL)HOXD1
ZODIACHOXD1
Ontologies - Pathways
QuickGOQ9GZZ0
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sensory perception of pain  neuron differentiation  sequence-specific DNA binding  embryonic skeletal system development  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sensory perception of pain  neuron differentiation  sequence-specific DNA binding  embryonic skeletal system development  
NDEx NetworkHOXD1
Atlas of Cancer Signalling NetworkHOXD1
Wikipedia pathwaysHOXD1
Orthology - Evolution
OrthoDB3231
GeneTree (enSembl)ENSG00000128645
Phylogenetic Trees/Animal Genes : TreeFamHOXD1
HOVERGENQ9GZZ0
HOGENOMQ9GZZ0
Homologs : HomoloGeneHOXD1
Homology/Alignments : Family Browser (UCSC)HOXD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXD1
dbVarHOXD1
ClinVarHOXD1
1000_GenomesHOXD1 
Exome Variant ServerHOXD1
ExAC (Exome Aggregation Consortium)HOXD1 (select the gene name)
Genetic variants : HAPMAP3231
Genomic Variants (DGV)HOXD1 [DGVbeta]
DECIPHER (Syndromes)2:177053307-177055635  ENSG00000128645
CONAN: Copy Number AnalysisHOXD1 
Mutations
ICGC Data PortalHOXD1 
TCGA Data PortalHOXD1 
Broad Tumor PortalHOXD1
OASIS PortalHOXD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXD1
DgiDB (Drug Gene Interaction Database)HOXD1
DoCM (Curated mutations)HOXD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXD1 (select a term)
intoGenHOXD1
Cancer3DHOXD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142987   
Orphanet
MedgenHOXD1
Genetic Testing Registry HOXD1
NextProtQ9GZZ0 [Medical]
TSGene3231
GENETestsHOXD1
Huge Navigator HOXD1 [HugePedia]
snp3D : Map Gene to Disease3231
BioCentury BCIQHOXD1
ClinGenHOXD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3231
Chemical/Pharm GKB GenePA29406
Clinical trialHOXD1
Miscellaneous
canSAR (ICR)HOXD1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXD1
EVEXHOXD1
GoPubMedHOXD1
iHOPHOXD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:36 CET 2017

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