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HOXD12 (homeobox D12)

Identity

Alias_namesHOX4H
homeo box D12
Other alias
HGNC (Hugo) HOXD12
LocusID (NCBI) 3238
Atlas_Id 64402
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 176964530 and ends at 176965488 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HOXD12   5135
Cards
Entrez_Gene (NCBI)HOXD12  3238  homeobox D12
AliasesHOX4H
GeneCards (Weizmann)HOXD12
Ensembl hg19 (Hinxton)ENSG00000170178 [Gene_View]  chr2:176964530-176965488 [Contig_View]  HOXD12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170178 [Gene_View]  chr2:176964530-176965488 [Contig_View]  HOXD12 [Vega]
ICGC DataPortalENSG00000170178
TCGA cBioPortalHOXD12
AceView (NCBI)HOXD12
Genatlas (Paris)HOXD12
WikiGenes3238
SOURCE (Princeton)HOXD12
Genetics Home Reference (NIH)HOXD12
Genomic and cartography
GoldenPath hg19 (UCSC)HOXD12  -     chr2:176964530-176965488 +  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HOXD12  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblHOXD12 - 2q31.1 [CytoView hg19]  HOXD12 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIHOXD12 [Mapview hg19]  HOXD12 [Mapview hg38]
OMIM142988   
Gene and transcription
Genbank (Entrez)BC069088 BC121103 BC121104 BG031716
RefSeq transcript (Entrez)NM_021193
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)HOXD12
Cluster EST : UnigeneHs.450028 [ NCBI ]
CGAP (NCI)Hs.450028
Alternative Splicing GalleryENSG00000170178
Gene ExpressionHOXD12 [ NCBI-GEO ]   HOXD12 [ EBI - ARRAY_EXPRESS ]   HOXD12 [ SEEK ]   HOXD12 [ MEM ]
Gene Expression Viewer (FireBrowse)HOXD12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3238
GTEX Portal (Tissue expression)HOXD12
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35452   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35452  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35452
Splice isoforms : SwissVarP35452
PhosPhoSitePlusP35452
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HOXD12
DMDM Disease mutations3238
Blocks (Seattle)HOXD12
SuperfamilyP35452
Human Protein AtlasENSG00000170178
Peptide AtlasP35452
HPRD00871
IPIIPI00784701   IPI00018803   IPI00878234   
Protein Interaction databases
DIP (DOE-UCLA)P35452
IntAct (EBI)P35452
FunCoupENSG00000170178
BioGRIDHOXD12
STRING (EMBL)HOXD12
ZODIACHOXD12
Ontologies - Pathways
QuickGOP35452
Ontology : AmiGOskeletal system development  protein binding  nucleus  transcription factor complex  transcription, DNA-templated  regulation of transcription, DNA-templated  pattern specification process  embryonic digit morphogenesis  sequence-specific DNA binding  
Ontology : EGO-EBIskeletal system development  protein binding  nucleus  transcription factor complex  transcription, DNA-templated  regulation of transcription, DNA-templated  pattern specification process  embryonic digit morphogenesis  sequence-specific DNA binding  
NDEx NetworkHOXD12
Atlas of Cancer Signalling NetworkHOXD12
Wikipedia pathwaysHOXD12
Orthology - Evolution
OrthoDB3238
GeneTree (enSembl)ENSG00000170178
Phylogenetic Trees/Animal Genes : TreeFamHOXD12
HOVERGENP35452
HOGENOMP35452
Homologs : HomoloGeneHOXD12
Homology/Alignments : Family Browser (UCSC)HOXD12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHOXD12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HOXD12
dbVarHOXD12
ClinVarHOXD12
1000_GenomesHOXD12 
Exome Variant ServerHOXD12
ExAC (Exome Aggregation Consortium)HOXD12 (select the gene name)
Genetic variants : HAPMAP3238
Genomic Variants (DGV)HOXD12 [DGVbeta]
DECIPHER (Syndromes)2:176964530-176965488  ENSG00000170178
CONAN: Copy Number AnalysisHOXD12 
Mutations
ICGC Data PortalHOXD12 
TCGA Data PortalHOXD12 
Broad Tumor PortalHOXD12
OASIS PortalHOXD12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHOXD12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHOXD12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HOXD12
DgiDB (Drug Gene Interaction Database)HOXD12
DoCM (Curated mutations)HOXD12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HOXD12 (select a term)
intoGenHOXD12
Cancer3DHOXD12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142988   
Orphanet
MedgenHOXD12
Genetic Testing Registry HOXD12
NextProtP35452 [Medical]
TSGene3238
GENETestsHOXD12
Huge Navigator HOXD12 [HugePedia]
snp3D : Map Gene to Disease3238
BioCentury BCIQHOXD12
ClinGenHOXD12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3238
Chemical/Pharm GKB GenePA29409
Clinical trialHOXD12
Miscellaneous
canSAR (ICR)HOXD12 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHOXD12
EVEXHOXD12
GoPubMedHOXD12
iHOPHOXD12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:07 CET 2017

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