Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HPCA (hippocalcin)

Identity

Other aliasBDR2
HGNC (Hugo) HPCA
LocusID (NCBI) 3208
Atlas_Id 64410
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33352098 and ends at 33360247 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HPCA   5144
Cards
Entrez_Gene (NCBI)HPCA  3208  hippocalcin
AliasesBDR2
GeneCards (Weizmann)HPCA
Ensembl hg19 (Hinxton)ENSG00000121905 [Gene_View]  chr1:33352098-33360247 [Contig_View]  HPCA [Vega]
Ensembl hg38 (Hinxton)ENSG00000121905 [Gene_View]  chr1:33352098-33360247 [Contig_View]  HPCA [Vega]
ICGC DataPortalENSG00000121905
TCGA cBioPortalHPCA
AceView (NCBI)HPCA
Genatlas (Paris)HPCA
WikiGenes3208
SOURCE (Princeton)HPCA
Genetics Home Reference (NIH)HPCA
Genomic and cartography
GoldenPath hg19 (UCSC)HPCA  -     chr1:33352098-33360247 +  1p35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HPCA  -     1p35.1   [Description]    (hg38-Dec_2013)
EnsemblHPCA - 1p35.1 [CytoView hg19]  HPCA - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIHPCA [Mapview hg19]  HPCA [Mapview hg38]
OMIM142622   
Gene and transcription
Genbank (Entrez)AK313907 BC001777 BT019750 BT019789 D16593
RefSeq transcript (Entrez)NM_002143
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)HPCA
Cluster EST : UnigeneHs.632391 [ NCBI ]
CGAP (NCI)Hs.632391
Alternative Splicing GalleryENSG00000121905
Gene ExpressionHPCA [ NCBI-GEO ]   HPCA [ EBI - ARRAY_EXPRESS ]   HPCA [ SEEK ]   HPCA [ MEM ]
Gene Expression Viewer (FireBrowse)HPCA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3208
GTEX Portal (Tissue expression)HPCA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP84074   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP84074  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP84074
Splice isoforms : SwissVarP84074
PhosPhoSitePlusP84074
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin   
Domain families : Pfam (Sanger)EF-hand_1 (PF00036)   
Domain families : Pfam (NCBI)pfam00036   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)HPCA
DMDM Disease mutations3208
Blocks (Seattle)HPCA
SuperfamilyP84074
Human Protein AtlasENSG00000121905
Peptide AtlasP84074
HPRD00811
IPIIPI00219103   
Protein Interaction databases
DIP (DOE-UCLA)P84074
IntAct (EBI)P84074
FunCoupENSG00000121905
BioGRIDHPCA
STRING (EMBL)HPCA
ZODIACHPCA
Ontologies - Pathways
QuickGOP84074
Ontology : AmiGOactin binding  calcium ion binding  inner ear development  
Ontology : EGO-EBIactin binding  calcium ion binding  inner ear development  
NDEx NetworkHPCA
Atlas of Cancer Signalling NetworkHPCA
Wikipedia pathwaysHPCA
Orthology - Evolution
OrthoDB3208
GeneTree (enSembl)ENSG00000121905
Phylogenetic Trees/Animal Genes : TreeFamHPCA
HOVERGENP84074
HOGENOMP84074
Homologs : HomoloGeneHPCA
Homology/Alignments : Family Browser (UCSC)HPCA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHPCA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HPCA
dbVarHPCA
ClinVarHPCA
1000_GenomesHPCA 
Exome Variant ServerHPCA
ExAC (Exome Aggregation Consortium)HPCA (select the gene name)
Genetic variants : HAPMAP3208
Genomic Variants (DGV)HPCA [DGVbeta]
DECIPHER (Syndromes)1:33352098-33360247  ENSG00000121905
CONAN: Copy Number AnalysisHPCA 
Mutations
ICGC Data PortalHPCA 
TCGA Data PortalHPCA 
Broad Tumor PortalHPCA
OASIS PortalHPCA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHPCA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHPCA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HPCA
DgiDB (Drug Gene Interaction Database)HPCA
DoCM (Curated mutations)HPCA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HPCA (select a term)
intoGenHPCA
Cancer3DHPCA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142622   
Orphanet14230   
MedgenHPCA
Genetic Testing Registry HPCA
NextProtP84074 [Medical]
TSGene3208
GENETestsHPCA
Huge Navigator HPCA [HugePedia]
snp3D : Map Gene to Disease3208
BioCentury BCIQHPCA
ClinGenHPCA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3208
Chemical/Pharm GKB GenePA29417
Clinical trialHPCA
Miscellaneous
canSAR (ICR)HPCA (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHPCA
EVEXHPCA
GoPubMedHPCA
iHOPHPCA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:09 CET 2017

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