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HPCAL1 (hippocalcin like 1)

Identity

Alias (NCBI)BDR1
HLP2
VILIP-3
HGNC (Hugo) HPCAL1
HGNC Alias symbBDR1
HLP2
VILIP-3
HGNC Alias namevisinin-like protein 3
 calcium-binding protein BDR-1
LocusID (NCBI) 3241
Atlas_Id 55870
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 10303700 and ends at 10427617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HPCAL1 (2p25.1) / CPSF3 (2p25.1)HPCAL1 (2p25.1) / HPCAL1 (2p25.1)HPCAL1 (2p25.1) / SEMA6D (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HPCAL1   5145
Cards
Entrez_Gene (NCBI)HPCAL1    hippocalcin like 1
AliasesBDR1; HLP2; VILIP-3
GeneCards (Weizmann)HPCAL1
Ensembl hg19 (Hinxton)ENSG00000115756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115756 [Gene_View]  ENSG00000115756 [Sequence]  chr2:10303700-10427617 [Contig_View]  HPCAL1 [Vega]
ICGC DataPortalENSG00000115756
TCGA cBioPortalHPCAL1
AceView (NCBI)HPCAL1
Genatlas (Paris)HPCAL1
SOURCE (Princeton)HPCAL1
Genetics Home Reference (NIH)HPCAL1
Genomic and cartography
GoldenPath hg38 (UCSC)HPCAL1  -     chr2:10303700-10427617 +  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HPCAL1  -     2p25.1   [Description]    (hg19-Feb_2009)
GoldenPathHPCAL1 - 2p25.1 [CytoView hg19]  HPCAL1 - 2p25.1 [CytoView hg38]
ImmunoBaseENSG00000115756
Genome Data Viewer NCBIHPCAL1 [Mapview hg19]  
OMIM600207   
Gene and transcription
Genbank (Entrez)AF070616 AK000596 AK093973 AK292280 BC009846
RefSeq transcript (Entrez)NM_001258357 NM_001258358 NM_001258359 NM_002149 NM_134421
Consensus coding sequences : CCDS (NCBI)HPCAL1
Gene ExpressionHPCAL1 [ NCBI-GEO ]   HPCAL1 [ EBI - ARRAY_EXPRESS ]   HPCAL1 [ SEEK ]   HPCAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HPCAL1 [ Firebrowse - Broad ]
GenevisibleExpression of HPCAL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3241
GTEX Portal (Tissue expression)HPCAL1
Human Protein AtlasENSG00000115756-HPCAL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP37235   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP37235  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP37235
PhosPhoSitePlusP37235
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)HPCAL1
PDB (RSDB)5T7C   
PDB Europe5T7C   
PDB (PDBSum)5T7C   
PDB (IMB)5T7C   
Structural Biology KnowledgeBase5T7C   
SCOP (Structural Classification of Proteins)5T7C   
CATH (Classification of proteins structures)5T7C   
SuperfamilyP37235
AlphaFold pdb e-kbP37235   
Human Protein Atlas [tissue]ENSG00000115756-HPCAL1 [tissue]
HPRD02564
Protein Interaction databases
DIP (DOE-UCLA)P37235
IntAct (EBI)P37235
BioGRIDHPCAL1
STRING (EMBL)HPCAL1
ZODIACHPCAL1
Ontologies - Pathways
QuickGOP37235
Ontology : AmiGOcalcium ion binding  protein binding  membrane  
Ontology : EGO-EBIcalcium ion binding  protein binding  membrane  
NDEx NetworkHPCAL1
Atlas of Cancer Signalling NetworkHPCAL1
Wikipedia pathwaysHPCAL1
Orthology - Evolution
OrthoDB3241
GeneTree (enSembl)ENSG00000115756
Phylogenetic Trees/Animal Genes : TreeFamHPCAL1
Homologs : HomoloGeneHPCAL1
Homology/Alignments : Family Browser (UCSC)HPCAL1
Gene fusions - Rearrangements
Fusion : QuiverHPCAL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHPCAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HPCAL1
dbVarHPCAL1
ClinVarHPCAL1
MonarchHPCAL1
1000_GenomesHPCAL1 
Exome Variant ServerHPCAL1
GNOMAD BrowserENSG00000115756
Varsome BrowserHPCAL1
ACMGHPCAL1 variants
VarityP37235
Genomic Variants (DGV)HPCAL1 [DGVbeta]
DECIPHERHPCAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHPCAL1 
Mutations
ICGC Data PortalHPCAL1 
TCGA Data PortalHPCAL1 
Broad Tumor PortalHPCAL1
OASIS PortalHPCAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHPCAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHPCAL1
Mutations and Diseases : HGMDHPCAL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHPCAL1
DgiDB (Drug Gene Interaction Database)HPCAL1
DoCM (Curated mutations)HPCAL1
CIViC (Clinical Interpretations of Variants in Cancer)HPCAL1
Cancer3DHPCAL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600207   
Orphanet
DisGeNETHPCAL1
MedgenHPCAL1
Genetic Testing Registry HPCAL1
NextProtP37235 [Medical]
GENETestsHPCAL1
Target ValidationHPCAL1
Huge Navigator HPCAL1 [HugePedia]
ClinGenHPCAL1
Clinical trials, drugs, therapy
MyCancerGenomeHPCAL1
Protein Interactions : CTDHPCAL1
Pharm GKB GenePA29418
PharosP37235
Clinical trialHPCAL1
Miscellaneous
canSAR (ICR)HPCAL1
HarmonizomeHPCAL1
DataMed IndexHPCAL1
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHPCAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:55 CEST 2021

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