Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HPCAL1 (hippocalcin like 1)

Identity

Alias_symbol (synonym)BDR1
HLP2
VILIP-3
Other alias
HGNC (Hugo) HPCAL1
LocusID (NCBI) 3241
Atlas_Id 55870
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 10470289 and ends at 10567743 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HPCAL1 (2p25.1) / CPSF3 (2p25.1)HPCAL1 (2p25.1) / HPCAL1 (2p25.1)HPCAL1 (2p25.1) / SEMA6D (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HPCAL1   5145
Cards
Entrez_Gene (NCBI)HPCAL1  3241  hippocalcin like 1
AliasesBDR1; HLP2; VILIP-3
GeneCards (Weizmann)HPCAL1
Ensembl hg19 (Hinxton)ENSG00000115756 [Gene_View]  chr2:10470289-10567743 [Contig_View]  HPCAL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115756 [Gene_View]  chr2:10470289-10567743 [Contig_View]  HPCAL1 [Vega]
ICGC DataPortalENSG00000115756
TCGA cBioPortalHPCAL1
AceView (NCBI)HPCAL1
Genatlas (Paris)HPCAL1
WikiGenes3241
SOURCE (Princeton)HPCAL1
Genetics Home Reference (NIH)HPCAL1
Genomic and cartography
GoldenPath hg19 (UCSC)HPCAL1  -     chr2:10470289-10567743 +  2p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HPCAL1  -     2p25.1   [Description]    (hg38-Dec_2013)
EnsemblHPCAL1 - 2p25.1 [CytoView hg19]  HPCAL1 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBIHPCAL1 [Mapview hg19]  HPCAL1 [Mapview hg38]
OMIM600207   
Gene and transcription
Genbank (Entrez)AF070616 AK000596 AK093973 AK292280 AM392553
RefSeq transcript (Entrez)NM_001258357 NM_001258358 NM_001258359 NM_002149 NM_134421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HPCAL1
Cluster EST : UnigeneHs.741268 [ NCBI ]
CGAP (NCI)Hs.741268
Alternative Splicing GalleryENSG00000115756
Gene ExpressionHPCAL1 [ NCBI-GEO ]   HPCAL1 [ EBI - ARRAY_EXPRESS ]   HPCAL1 [ SEEK ]   HPCAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HPCAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3241
GTEX Portal (Tissue expression)HPCAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP37235   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP37235  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP37235
Splice isoforms : SwissVarP37235
PhosPhoSitePlusP37235
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)HPCAL1
DMDM Disease mutations3241
Blocks (Seattle)HPCAL1
SuperfamilyP37235
Human Protein AtlasENSG00000115756
Peptide AtlasP37235
HPRD02564
IPIIPI00219344   IPI00470800   IPI00894381   IPI00894533   
Protein Interaction databases
DIP (DOE-UCLA)P37235
IntAct (EBI)P37235
FunCoupENSG00000115756
BioGRIDHPCAL1
STRING (EMBL)HPCAL1
ZODIACHPCAL1
Ontologies - Pathways
QuickGOP37235
Ontology : AmiGOcalcium ion binding  protein binding  membrane  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  protein binding  membrane  extracellular exosome  
NDEx NetworkHPCAL1
Atlas of Cancer Signalling NetworkHPCAL1
Wikipedia pathwaysHPCAL1
Orthology - Evolution
OrthoDB3241
GeneTree (enSembl)ENSG00000115756
Phylogenetic Trees/Animal Genes : TreeFamHPCAL1
HOVERGENP37235
HOGENOMP37235
Homologs : HomoloGeneHPCAL1
Homology/Alignments : Family Browser (UCSC)HPCAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHPCAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HPCAL1
dbVarHPCAL1
ClinVarHPCAL1
1000_GenomesHPCAL1 
Exome Variant ServerHPCAL1
ExAC (Exome Aggregation Consortium)HPCAL1 (select the gene name)
Genetic variants : HAPMAP3241
Genomic Variants (DGV)HPCAL1 [DGVbeta]
DECIPHER (Syndromes)2:10470289-10567743  ENSG00000115756
CONAN: Copy Number AnalysisHPCAL1 
Mutations
ICGC Data PortalHPCAL1 
TCGA Data PortalHPCAL1 
Broad Tumor PortalHPCAL1
OASIS PortalHPCAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHPCAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHPCAL1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch HPCAL1
DgiDB (Drug Gene Interaction Database)HPCAL1
DoCM (Curated mutations)HPCAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HPCAL1 (select a term)
intoGenHPCAL1
Cancer3DHPCAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600207   
Orphanet
MedgenHPCAL1
Genetic Testing Registry HPCAL1
NextProtP37235 [Medical]
TSGene3241
GENETestsHPCAL1
Huge Navigator HPCAL1 [HugePedia]
snp3D : Map Gene to Disease3241
BioCentury BCIQHPCAL1
ClinGenHPCAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3241
Chemical/Pharm GKB GenePA29418
Clinical trialHPCAL1
Miscellaneous
canSAR (ICR)HPCAL1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHPCAL1
EVEXHPCAL1
GoPubMedHPCAL1
iHOPHPCAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:15 CEST 2017

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