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HPCAL4 (hippocalcin like 4)

Identity

Alias_symbol (synonym)HLP4
DKFZp761G122
Other alias
HGNC (Hugo) HPCAL4
LocusID (NCBI) 51440
Atlas_Id 64412
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 39678648 and ends at 39691485 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HPCAL4 (1p34.2) / UBC (12q24.31)MED1 (17q12) / HPCAL4 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HPCAL4   18212
Cards
Entrez_Gene (NCBI)HPCAL4  51440  hippocalcin like 4
AliasesHLP4
GeneCards (Weizmann)HPCAL4
Ensembl hg19 (Hinxton)ENSG00000116983 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116983 [Gene_View]  chr1:39678648-39691485 [Contig_View]  HPCAL4 [Vega]
ICGC DataPortalENSG00000116983
TCGA cBioPortalHPCAL4
AceView (NCBI)HPCAL4
Genatlas (Paris)HPCAL4
WikiGenes51440
SOURCE (Princeton)HPCAL4
Genetics Home Reference (NIH)HPCAL4
Genomic and cartography
GoldenPath hg38 (UCSC)HPCAL4  -     chr1:39678648-39691485 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HPCAL4  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblHPCAL4 - 1p34.2 [CytoView hg19]  HPCAL4 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIHPCAL4 [Mapview hg19]  HPCAL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB001105 AK294412 AK294813 AK312314 AL136591
RefSeq transcript (Entrez)NM_001282396 NM_001282397 NM_016257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HPCAL4
Cluster EST : UnigeneHs.743975 [ NCBI ]
CGAP (NCI)Hs.743975
Alternative Splicing GalleryENSG00000116983
Gene ExpressionHPCAL4 [ NCBI-GEO ]   HPCAL4 [ EBI - ARRAY_EXPRESS ]   HPCAL4 [ SEEK ]   HPCAL4 [ MEM ]
Gene Expression Viewer (FireBrowse)HPCAL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51440
GTEX Portal (Tissue expression)HPCAL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UM19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UM19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UM19
Splice isoforms : SwissVarQ9UM19
PhosPhoSitePlusQ9UM19
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    VILIP-2   
Domain families : Pfam (Sanger)EF-hand_1 (PF00036)    EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam00036    pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)HPCAL4
DMDM Disease mutations51440
Blocks (Seattle)HPCAL4
SuperfamilyQ9UM19
Human Protein AtlasENSG00000116983
Peptide AtlasQ9UM19
HPRD17113
IPIIPI00008305   IPI01012225   IPI00910389   
Protein Interaction databases
DIP (DOE-UCLA)Q9UM19
IntAct (EBI)Q9UM19
FunCoupENSG00000116983
BioGRIDHPCAL4
STRING (EMBL)HPCAL4
ZODIACHPCAL4
Ontologies - Pathways
QuickGOQ9UM19
Ontology : AmiGOcalcium channel regulator activity  calcium ion binding  protein binding  intracellular  signal transduction  central nervous system development  protein C-terminus binding  protein domain specific binding  regulation of molecular function  
Ontology : EGO-EBIcalcium channel regulator activity  calcium ion binding  protein binding  intracellular  signal transduction  central nervous system development  protein C-terminus binding  protein domain specific binding  regulation of molecular function  
NDEx NetworkHPCAL4
Atlas of Cancer Signalling NetworkHPCAL4
Wikipedia pathwaysHPCAL4
Orthology - Evolution
OrthoDB51440
GeneTree (enSembl)ENSG00000116983
Phylogenetic Trees/Animal Genes : TreeFamHPCAL4
HOVERGENQ9UM19
HOGENOMQ9UM19
Homologs : HomoloGeneHPCAL4
Homology/Alignments : Family Browser (UCSC)HPCAL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHPCAL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HPCAL4
dbVarHPCAL4
ClinVarHPCAL4
1000_GenomesHPCAL4 
Exome Variant ServerHPCAL4
ExAC (Exome Aggregation Consortium)HPCAL4 (select the gene name)
Genetic variants : HAPMAP51440
Genomic Variants (DGV)HPCAL4 [DGVbeta]
DECIPHERHPCAL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHPCAL4 
Mutations
ICGC Data PortalHPCAL4 
TCGA Data PortalHPCAL4 
Broad Tumor PortalHPCAL4
OASIS PortalHPCAL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHPCAL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHPCAL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HPCAL4
DgiDB (Drug Gene Interaction Database)HPCAL4
DoCM (Curated mutations)HPCAL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HPCAL4 (select a term)
intoGenHPCAL4
Cancer3DHPCAL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHPCAL4
Genetic Testing Registry HPCAL4
NextProtQ9UM19 [Medical]
TSGene51440
GENETestsHPCAL4
Target ValidationHPCAL4
Huge Navigator HPCAL4 [HugePedia]
snp3D : Map Gene to Disease51440
BioCentury BCIQHPCAL4
ClinGenHPCAL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51440
Chemical/Pharm GKB GenePA134924885
Clinical trialHPCAL4
Miscellaneous
canSAR (ICR)HPCAL4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHPCAL4
EVEXHPCAL4
GoPubMedHPCAL4
iHOPHPCAL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:44 CEST 2017

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