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HPDL (4-hydroxyphenylpyruvate dioxygenase like)

Identity

Alias_namesGLOXD1
glyoxalase domain containing 1
Alias_symbol (synonym)MGC15668
4-HPPD-L
Other alias
HGNC (Hugo) HPDL
LocusID (NCBI) 84842
Atlas_Id 64414
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45326873 and ends at 45328674 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HPDL   28242
Cards
Entrez_Gene (NCBI)HPDL  84842  4-hydroxyphenylpyruvate dioxygenase like
Aliases4-HPPD-L; GLOXD1
GeneCards (Weizmann)HPDL
Ensembl hg19 (Hinxton)ENSG00000186603 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186603 [Gene_View]  chr1:45326873-45328674 [Contig_View]  HPDL [Vega]
ICGC DataPortalENSG00000186603
TCGA cBioPortalHPDL
AceView (NCBI)HPDL
Genatlas (Paris)HPDL
WikiGenes84842
SOURCE (Princeton)HPDL
Genetics Home Reference (NIH)HPDL
Genomic and cartography
GoldenPath hg38 (UCSC)HPDL  -     chr1:45326873-45328674 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HPDL  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblHPDL - 1p34.1 [CytoView hg19]  HPDL - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIHPDL [Mapview hg19]  HPDL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI808699 AK313714 BC007293 BQ069740
RefSeq transcript (Entrez)NM_032756
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HPDL
Cluster EST : UnigeneHs.162717 [ NCBI ]
CGAP (NCI)Hs.162717
Alternative Splicing GalleryENSG00000186603
Gene ExpressionHPDL [ NCBI-GEO ]   HPDL [ EBI - ARRAY_EXPRESS ]   HPDL [ SEEK ]   HPDL [ MEM ]
Gene Expression Viewer (FireBrowse)HPDL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84842
GTEX Portal (Tissue expression)HPDL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IR7
Splice isoforms : SwissVarQ96IR7
Catalytic activity : Enzyme1.13.-.- [ Enzyme-Expasy ]   1.13.-.-1.13.-.- [ IntEnz-EBI ]   1.13.-.- [ BRENDA ]   1.13.-.- [ KEGG ]   
PhosPhoSitePlusQ96IR7
Domaine pattern : Prosite (Expaxy)VOC (PS51819)   
Domains : Interpro (EBI)4OHPhenylPyrv_dOase    Glyas_Bleomycin-R_OHBP_Dase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HPDL
DMDM Disease mutations84842
Blocks (Seattle)HPDL
SuperfamilyQ96IR7
Human Protein AtlasENSG00000186603
Peptide AtlasQ96IR7
HPRD17509
IPIIPI00063762   
Protein Interaction databases
DIP (DOE-UCLA)Q96IR7
IntAct (EBI)Q96IR7
FunCoupENSG00000186603
BioGRIDHPDL
STRING (EMBL)HPDL
ZODIACHPDL
Ontologies - Pathways
QuickGOQ96IR7
Ontology : AmiGO4-hydroxyphenylpyruvate dioxygenase activity  tyrosine catabolic process  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBI4-hydroxyphenylpyruvate dioxygenase activity  tyrosine catabolic process  metal ion binding  oxidation-reduction process  
NDEx NetworkHPDL
Atlas of Cancer Signalling NetworkHPDL
Wikipedia pathwaysHPDL
Orthology - Evolution
OrthoDB84842
GeneTree (enSembl)ENSG00000186603
Phylogenetic Trees/Animal Genes : TreeFamHPDL
HOVERGENQ96IR7
HOGENOMQ96IR7
Homologs : HomoloGeneHPDL
Homology/Alignments : Family Browser (UCSC)HPDL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHPDL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HPDL
dbVarHPDL
ClinVarHPDL
1000_GenomesHPDL 
Exome Variant ServerHPDL
ExAC (Exome Aggregation Consortium)HPDL (select the gene name)
Genetic variants : HAPMAP84842
Genomic Variants (DGV)HPDL [DGVbeta]
DECIPHERHPDL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHPDL 
Mutations
ICGC Data PortalHPDL 
TCGA Data PortalHPDL 
Broad Tumor PortalHPDL
OASIS PortalHPDL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHPDL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHPDL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HPDL
DgiDB (Drug Gene Interaction Database)HPDL
DoCM (Curated mutations)HPDL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HPDL (select a term)
intoGenHPDL
Cancer3DHPDL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHPDL
Genetic Testing Registry HPDL
NextProtQ96IR7 [Medical]
TSGene84842
GENETestsHPDL
Huge Navigator HPDL [HugePedia]
snp3D : Map Gene to Disease84842
BioCentury BCIQHPDL
ClinGenHPDL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84842
Chemical/Pharm GKB GenePA162391595
Clinical trialHPDL
Miscellaneous
canSAR (ICR)HPDL (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHPDL
EVEXHPDL
GoPubMedHPDL
iHOPHPDL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:16:03 CEST 2017

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