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HPF1 (histone PARylation factor 1)

Identity

Alias_namesC4orf27
chromosome 4 open reading frame 27
Alias_symbol (synonym)FLJ20534
Other alias
HGNC (Hugo) HPF1
LocusID (NCBI) 54969
Atlas_Id 78372
Location 4q33  [Link to chromosome band 4q33]
Location_base_pair Starts at 169729468 and ends at 169757942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HPF1   26051
Cards
Entrez_Gene (NCBI)HPF1  54969  histone PARylation factor 1
AliasesC4orf27
GeneCards (Weizmann)HPF1
Ensembl hg19 (Hinxton)ENSG00000056050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000056050 [Gene_View]  chr4:169729468-169757942 [Contig_View]  HPF1 [Vega]
ICGC DataPortalENSG00000056050
TCGA cBioPortalHPF1
AceView (NCBI)HPF1
Genatlas (Paris)HPF1
WikiGenes54969
SOURCE (Princeton)HPF1
Genetics Home Reference (NIH)HPF1
Genomic and cartography
GoldenPath hg38 (UCSC)HPF1  -     chr4:169729468-169757942 -  4q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HPF1  -     4q33   [Description]    (hg19-Feb_2009)
EnsemblHPF1 - 4q33 [CytoView hg19]  HPF1 - 4q33 [CytoView hg38]
Mapping of homologs : NCBIHPF1 [Mapview hg19]  HPF1 [Mapview hg38]
OMIM616614   
Gene and transcription
Genbank (Entrez)AK000541 AK090742 AK124036 AL136673 AM392880
RefSeq transcript (Entrez)NM_017867
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HPF1
Cluster EST : UnigeneHs.406756 [ NCBI ]
CGAP (NCI)Hs.406756
Alternative Splicing GalleryENSG00000056050
Gene ExpressionHPF1 [ NCBI-GEO ]   HPF1 [ EBI - ARRAY_EXPRESS ]   HPF1 [ SEEK ]   HPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)HPF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54969
GTEX Portal (Tissue expression)HPF1
Human Protein AtlasENSG00000056050-HPF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWY4
Splice isoforms : SwissVarQ9NWY4
PhosPhoSitePlusQ9NWY4
Domains : Interpro (EBI)HPF1   
Domain families : Pfam (Sanger)DUF2228 (PF10228)   
Domain families : Pfam (NCBI)pfam10228   
Conserved Domain (NCBI)HPF1
DMDM Disease mutations54969
Blocks (Seattle)HPF1
SuperfamilyQ9NWY4
Human Protein Atlas [tissue]ENSG00000056050-HPF1 [tissue]
Peptide AtlasQ9NWY4
HPRD07924
IPIIPI00016532   IPI00983006   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWY4
IntAct (EBI)Q9NWY4
FunCoupENSG00000056050
BioGRIDHPF1
STRING (EMBL)HPF1
ZODIACHPF1
Ontologies - Pathways
QuickGOQ9NWY4
Ontology : AmiGOprotein binding  nucleus  cellular response to DNA damage stimulus  regulation of protein ADP-ribosylation  peptidyl-serine ADP-ribosylation  histone binding  
Ontology : EGO-EBIprotein binding  nucleus  cellular response to DNA damage stimulus  regulation of protein ADP-ribosylation  peptidyl-serine ADP-ribosylation  histone binding  
NDEx NetworkHPF1
Atlas of Cancer Signalling NetworkHPF1
Wikipedia pathwaysHPF1
Orthology - Evolution
OrthoDB54969
GeneTree (enSembl)ENSG00000056050
Phylogenetic Trees/Animal Genes : TreeFamHPF1
HOVERGENQ9NWY4
HOGENOMQ9NWY4
Homologs : HomoloGeneHPF1
Homology/Alignments : Family Browser (UCSC)HPF1
Gene fusions - Rearrangements
Tumor Fusion PortalHPF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HPF1
dbVarHPF1
ClinVarHPF1
1000_GenomesHPF1 
Exome Variant ServerHPF1
ExAC (Exome Aggregation Consortium)ENSG00000056050
GNOMAD BrowserENSG00000056050
Genetic variants : HAPMAP54969
Genomic Variants (DGV)HPF1 [DGVbeta]
DECIPHERHPF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHPF1 
Mutations
ICGC Data PortalHPF1 
TCGA Data PortalHPF1 
Broad Tumor PortalHPF1
OASIS PortalHPF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHPF1
BioMutasearch HPF1
DgiDB (Drug Gene Interaction Database)HPF1
DoCM (Curated mutations)HPF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HPF1 (select a term)
intoGenHPF1
Cancer3DHPF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616614   
Orphanet
DisGeNETHPF1
MedgenHPF1
Genetic Testing Registry HPF1
NextProtQ9NWY4 [Medical]
TSGene54969
GENETestsHPF1
Target ValidationHPF1
Huge Navigator HPF1 [HugePedia]
snp3D : Map Gene to Disease54969
BioCentury BCIQHPF1
ClinGenHPF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54969
Chemical/Pharm GKB GenePA145149735
Clinical trialHPF1
Miscellaneous
canSAR (ICR)HPF1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHPF1
EVEXHPF1
GoPubMedHPF1
iHOPHPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:59 CET 2017

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