Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HPYR1 (Helicobacter pylori responsive 1 (non-protein coding))

Identity

Alias_namesHelicobacter pylori responsive 1
Alias_symbol (synonym)HPRG1
NCRNA00027
LINC00027
Other alias
HGNC (Hugo) HPYR1
LocusID (NCBI) 93668
Atlas_Id 64420
Location 8q24.22  [Link to chromosome band 8q24]
Location_base_pair Starts at 133572745 and ends at 133573726 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HPYR1   16071
Cards
Entrez_Gene (NCBI)HPYR1  93668  Helicobacter pylori responsive 1 (non-protein coding)
AliasesHPRG1; LINC00027; NCRNA00027
GeneCards (Weizmann)HPYR1
Ensembl hg19 (Hinxton)ENSG00000253521 [Gene_View]  chr8:133572745-133573726 [Contig_View]  HPYR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000253521 [Gene_View]  chr8:133572745-133573726 [Contig_View]  HPYR1 [Vega]
ICGC DataPortalENSG00000253521
TCGA cBioPortalHPYR1
AceView (NCBI)HPYR1
Genatlas (Paris)HPYR1
WikiGenes93668
SOURCE (Princeton)HPYR1
Genetics Home Reference (NIH)HPYR1
Genomic and cartography
GoldenPath hg19 (UCSC)HPYR1  -     chr8:133572745-133573726 -  8q24.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HPYR1  -     8q24.22   [Description]    (hg38-Dec_2013)
EnsemblHPYR1 - 8q24.22 [CytoView hg19]  HPYR1 - 8q24.22 [CytoView hg38]
Mapping of homologs : NCBIHPYR1 [Mapview hg19]  HPYR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF200341 HG501713
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)HPYR1
Cluster EST : UnigeneHs.545218 [ NCBI ]
CGAP (NCI)Hs.545218
Alternative Splicing GalleryENSG00000253521
Gene ExpressionHPYR1 [ NCBI-GEO ]   HPYR1 [ EBI - ARRAY_EXPRESS ]   HPYR1 [ SEEK ]   HPYR1 [ MEM ]
Gene Expression Viewer (FireBrowse)HPYR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)93668
GTEX Portal (Tissue expression)HPYR1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HPYR1
DMDM Disease mutations93668
Blocks (Seattle)HPYR1
Human Protein AtlasENSG00000253521
Protein Interaction databases
FunCoupENSG00000253521
BioGRIDHPYR1
STRING (EMBL)HPYR1
ZODIACHPYR1
Ontologies - Pathways
Huge Navigator HPYR1 [HugePedia]
snp3D : Map Gene to Disease93668
BioCentury BCIQHPYR1
ClinGenHPYR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93668
Chemical/Pharm GKB GenePA29442
Clinical trialHPYR1
Miscellaneous
canSAR (ICR)HPYR1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHPYR1
EVEXHPYR1
GoPubMedHPYR1
iHOPHPYR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:11 CET 2017

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