Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HR (HR, lysine demethylase and nuclear receptor corepressor)

Identity

Alias_namesALUNC
hairless (mouse) homolog
hairless homolog (mouse)
Alias_symbol (synonym)AU
Other aliasHSA277165
HYPT4
MUHH
MUHH1
HGNC (Hugo) HR
LocusID (NCBI) 55806
Atlas_Id 64421
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22114419 and ends at 22131052 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HR   5172
Cards
Entrez_Gene (NCBI)HR  55806  HR, lysine demethylase and nuclear receptor corepressor
AliasesALUNC; AU; HSA277165; HYPT4; 
MUHH; MUHH1
GeneCards (Weizmann)HR
Ensembl hg19 (Hinxton)ENSG00000168453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168453 [Gene_View]  chr8:22114419-22131052 [Contig_View]  HR [Vega]
ICGC DataPortalENSG00000168453
TCGA cBioPortalHR
AceView (NCBI)HR
Genatlas (Paris)HR
WikiGenes55806
SOURCE (Princeton)HR
Genetics Home Reference (NIH)HR
Genomic and cartography
GoldenPath hg38 (UCSC)HR  -     chr8:22114419-22131052 -  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HR  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblHR - 8p21.3 [CytoView hg19]  HR - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIHR [Mapview hg19]  HR [Mapview hg38]
OMIM146550   203655   209500   602302   
Gene and transcription
Genbank (Entrez)AF039196 AJ277165 AK098053 AK308839 AL833253
RefSeq transcript (Entrez)NM_005144 NM_018411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HR
Cluster EST : UnigeneHs.272367 [ NCBI ]
CGAP (NCI)Hs.272367
Alternative Splicing GalleryENSG00000168453
Gene ExpressionHR [ NCBI-GEO ]   HR [ EBI - ARRAY_EXPRESS ]   HR [ SEEK ]   HR [ MEM ]
Gene Expression Viewer (FireBrowse)HR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55806
GTEX Portal (Tissue expression)HR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43593   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43593  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43593
Splice isoforms : SwissVarO43593
PhosPhoSitePlusO43593
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom   
Domain families : Pfam (Sanger)JmjC (PF02373)   
Domain families : Pfam (NCBI)pfam02373   
Domain families : Smart (EMBL)JmjC (SM00558)  
Conserved Domain (NCBI)HR
DMDM Disease mutations55806
Blocks (Seattle)HR
SuperfamilyO43593
Human Protein AtlasENSG00000168453
Peptide AtlasO43593
HPRD03808
IPIIPI00292057   IPI00216544   IPI00982245   
Protein Interaction databases
DIP (DOE-UCLA)O43593
IntAct (EBI)O43593
FunCoupENSG00000168453
BioGRIDHR
STRING (EMBL)HR
ZODIACHR
Ontologies - Pathways
QuickGOO43593
Ontology : AmiGOchromatin  transcription regulatory region sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  nucleus  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  oxidoreductase activity  nuclear body  chromatin DNA binding  histone demethylase activity (H3-K9 specific)  histone H3-K9 demethylation  negative regulation of transcription, DNA-templated  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBIchromatin  transcription regulatory region sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  nucleus  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  oxidoreductase activity  nuclear body  chromatin DNA binding  histone demethylase activity (H3-K9 specific)  histone H3-K9 demethylation  negative regulation of transcription, DNA-templated  metal ion binding  oxidation-reduction process  
NDEx NetworkHR
Atlas of Cancer Signalling NetworkHR
Wikipedia pathwaysHR
Orthology - Evolution
OrthoDB55806
GeneTree (enSembl)ENSG00000168453
Phylogenetic Trees/Animal Genes : TreeFamHR
HOVERGENO43593
HOGENOMO43593
Homologs : HomoloGeneHR
Homology/Alignments : Family Browser (UCSC)HR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HR
dbVarHR
ClinVarHR
1000_GenomesHR 
Exome Variant ServerHR
ExAC (Exome Aggregation Consortium)HR (select the gene name)
Genetic variants : HAPMAP55806
Genomic Variants (DGV)HR [DGVbeta]
DECIPHERHR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHR 
Mutations
ICGC Data PortalHR 
TCGA Data PortalHR 
Broad Tumor PortalHR
OASIS PortalHR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HR
DgiDB (Drug Gene Interaction Database)HR
DoCM (Curated mutations)HR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HR (select a term)
intoGenHR
Cancer3DHR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146550    203655    209500    602302   
Orphanet1321    8577    11739   
MedgenHR
Genetic Testing Registry HR
NextProtO43593 [Medical]
TSGene55806
GENETestsHR
Target ValidationHR
Huge Navigator HR [HugePedia]
snp3D : Map Gene to Disease55806
BioCentury BCIQHR
ClinGenHR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55806
Chemical/Pharm GKB GenePA29443
Clinical trialHR
Miscellaneous
canSAR (ICR)HR (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHR
EVEXHR
GoPubMedHR
iHOPHR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:47 CEST 2017

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