Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HRAT17 (heart tissue-associated transcript 17)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 101928036
Atlas_Id 67270
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112954635 and ends at 112995643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HRAT17  101928036  heart tissue-associated transcript 17
Aliases
GeneCards (Weizmann)HRAT17
Ensembl hg19 (Hinxton)ENSG00000234520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234520 [Gene_View]  ENSG00000234520 [Sequence]  chr7:112954635-112995643 [Contig_View]  HRAT17 [Vega]
ICGC DataPortalENSG00000234520
TCGA cBioPortalHRAT17
AceView (NCBI)HRAT17
Genatlas (Paris)HRAT17
WikiGenes101928036
SOURCE (Princeton)HRAT17
Genetics Home Reference (NIH)HRAT17
Genomic and cartography
GoldenPath hg38 (UCSC)HRAT17  -     chr7:112954635-112995643 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HRAT17  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblHRAT17 - 7q31.1 [CytoView hg19]  HRAT17 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIHRAT17 [Mapview hg19]  HRAT17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA707363 AA992588 BX116119
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HRAT17
Cluster EST : UnigeneHs.120006 [ NCBI ]
CGAP (NCI)Hs.120006
Alternative Splicing GalleryENSG00000234520
Gene ExpressionHRAT17 [ NCBI-GEO ]   HRAT17 [ EBI - ARRAY_EXPRESS ]   HRAT17 [ SEEK ]   HRAT17 [ MEM ]
Gene Expression Viewer (FireBrowse)HRAT17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928036
GTEX Portal (Tissue expression)HRAT17
Human Protein AtlasENSG00000234520-HRAT17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HRAT17
DMDM Disease mutations101928036
Blocks (Seattle)HRAT17
Human Protein Atlas [tissue]ENSG00000234520-HRAT17 [tissue]
Protein Interaction databases
FunCoupENSG00000234520
BioGRIDHRAT17
STRING (EMBL)HRAT17
ZODIACHRAT17
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease101928036
BioCentury BCIQHRAT17
ClinGenHRAT17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928036
Clinical trialHRAT17
Miscellaneous
canSAR (ICR)HRAT17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHRAT17
EVEXHRAT17
GoPubMedHRAT17
iHOPHRAT17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:49:19 CEST 2018
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