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HRAT5 (heart tissue-associated transcript 5)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 102467073
Atlas_Id 67644
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 269556 and ends at 271524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HRAT5  102467073  heart tissue-associated transcript 5
Aliases
GeneCards (Weizmann)HRAT5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:269556-271524 [Contig_View]  HRAT5 [Vega]
TCGA cBioPortalHRAT5
AceView (NCBI)HRAT5
Genatlas (Paris)HRAT5
WikiGenes102467073
SOURCE (Princeton)HRAT5
Genetics Home Reference (NIH)HRAT5
Genomic and cartography
GoldenPath hg38 (UCSC)HRAT5  -     chr5:269556-271524 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HRAT5  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblHRAT5 - 5p15.33 [CytoView hg19]  HRAT5 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIHRAT5 [Mapview hg19]  HRAT5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU930695
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HRAT5
Cluster EST : UnigeneHs.368328 [ NCBI ]
CGAP (NCI)Hs.368328
Gene ExpressionHRAT5 [ NCBI-GEO ]   HRAT5 [ EBI - ARRAY_EXPRESS ]   HRAT5 [ SEEK ]   HRAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)HRAT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102467073
GTEX Portal (Tissue expression)HRAT5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HRAT5
DMDM Disease mutations102467073
Blocks (Seattle)HRAT5
Protein Interaction databases
BioGRIDHRAT5
STRING (EMBL)HRAT5
ZODIACHRAT5
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease102467073
BioCentury BCIQHRAT5
ClinGenHRAT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102467073
Clinical trialHRAT5
Miscellaneous
canSAR (ICR)HRAT5 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHRAT5
EVEXHRAT5
GoPubMedHRAT5
iHOPHRAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:45:55 CET 2017

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