Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HRCT1 (histidine rich carboxyl terminus 1)

Identity

Alias_symbol (synonym)LGLL338
PRO537
UNQ338
Other alias
HGNC (Hugo) HRCT1
LocusID (NCBI) 646962
Atlas_Id 64424
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35906192 and ends at 35907141 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HRCT1   33872
Cards
Entrez_Gene (NCBI)HRCT1  646962  histidine rich carboxyl terminus 1
AliasesLGLL338; PRO537; UNQ338
GeneCards (Weizmann)HRCT1
Ensembl hg19 (Hinxton)ENSG00000196196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196196 [Gene_View]  chr9:35906192-35907141 [Contig_View]  HRCT1 [Vega]
ICGC DataPortalENSG00000196196
TCGA cBioPortalHRCT1
AceView (NCBI)HRCT1
Genatlas (Paris)HRCT1
WikiGenes646962
SOURCE (Princeton)HRCT1
Genetics Home Reference (NIH)HRCT1
Genomic and cartography
GoldenPath hg38 (UCSC)HRCT1  -     chr9:35906192-35907141 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HRCT1  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblHRCT1 - 9p13.3 [CytoView hg19]  HRCT1 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIHRCT1 [Mapview hg19]  HRCT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358408
RefSeq transcript (Entrez)NM_001039792
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HRCT1
Cluster EST : UnigeneHs.208081 [ NCBI ]
CGAP (NCI)Hs.208081
Alternative Splicing GalleryENSG00000196196
Gene ExpressionHRCT1 [ NCBI-GEO ]   HRCT1 [ EBI - ARRAY_EXPRESS ]   HRCT1 [ SEEK ]   HRCT1 [ MEM ]
Gene Expression Viewer (FireBrowse)HRCT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646962
GTEX Portal (Tissue expression)HRCT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXD1
Splice isoforms : SwissVarQ6UXD1
PhosPhoSitePlusQ6UXD1
Domains : Interpro (EBI)HRCT1   
Domain families : Pfam (Sanger)HRCT1 (PF15758)   
Domain families : Pfam (NCBI)pfam15758   
Conserved Domain (NCBI)HRCT1
DMDM Disease mutations646962
Blocks (Seattle)HRCT1
SuperfamilyQ6UXD1
Human Protein AtlasENSG00000196196
Peptide AtlasQ6UXD1
IPIIPI00432482   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXD1
IntAct (EBI)Q6UXD1
FunCoupENSG00000196196
BioGRIDHRCT1
STRING (EMBL)HRCT1
ZODIACHRCT1
Ontologies - Pathways
QuickGOQ6UXD1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkHRCT1
Atlas of Cancer Signalling NetworkHRCT1
Wikipedia pathwaysHRCT1
Orthology - Evolution
OrthoDB646962
GeneTree (enSembl)ENSG00000196196
Phylogenetic Trees/Animal Genes : TreeFamHRCT1
HOVERGENQ6UXD1
HOGENOMQ6UXD1
Homologs : HomoloGeneHRCT1
Homology/Alignments : Family Browser (UCSC)HRCT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHRCT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HRCT1
dbVarHRCT1
ClinVarHRCT1
1000_GenomesHRCT1 
Exome Variant ServerHRCT1
ExAC (Exome Aggregation Consortium)HRCT1 (select the gene name)
Genetic variants : HAPMAP646962
Genomic Variants (DGV)HRCT1 [DGVbeta]
DECIPHERHRCT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHRCT1 
Mutations
ICGC Data PortalHRCT1 
TCGA Data PortalHRCT1 
Broad Tumor PortalHRCT1
OASIS PortalHRCT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHRCT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHRCT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HRCT1
DgiDB (Drug Gene Interaction Database)HRCT1
DoCM (Curated mutations)HRCT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HRCT1 (select a term)
intoGenHRCT1
Cancer3DHRCT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHRCT1
Genetic Testing Registry HRCT1
NextProtQ6UXD1 [Medical]
TSGene646962
GENETestsHRCT1
Target ValidationHRCT1
Huge Navigator HRCT1 [HugePedia]
snp3D : Map Gene to Disease646962
BioCentury BCIQHRCT1
ClinGenHRCT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646962
Chemical/Pharm GKB GenePA164720718
Clinical trialHRCT1
Miscellaneous
canSAR (ICR)HRCT1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHRCT1
EVEXHRCT1
GoPubMedHRCT1
iHOPHRCT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:49 CEST 2017

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