Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HRH1 (histamine receptor H1)

Identity

Other namesH1-R
hisH1
HGNC (Hugo) HRH1
LocusID (NCBI) 3269
Location 3p25.3
Location_base_pair Starts at 11294385 and ends at 11304939 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HRH1   5182
Entrez_Gene (NCBI)HRH1  3269  histamine receptor H1
Cards
GeneCards (Weizmann)HRH1
Ensembl (Hinxton)ENSG00000196639 [Gene_View]  chr3:11294385-11304939 [Contig_View]  HRH1 [Vega]
AceView (NCBI)HRH1
Genatlas (Paris)HRH1
SOURCE (Stanford)NM_000861 NM_001098211 NM_001098212 NM_001098213
Genomic and cartography
GoldenPath (UCSC)HRH1  -  3p25.3   chr3:11294385-11304939 +  3p25.3   [Description]    (hg19-Feb_2009)
EnsemblHRH1 - 3p25.3 [CytoView]
Mapping of homologs : NCBIHRH1 [Mapview]
OMIM600167   
Gene and transcription
Genbank (Entrez)AF026261 AK289412 AK292157 AK312879 AY136743
RefSeq transcript (SRS)NM_000861 NM_001098211 NM_001098212 NM_001098213
RefSeq transcript (Entrez)NM_000861 NM_001098211 NM_001098212 NM_001098213
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)HRH1
Cluster EST : UnigeneHs.1570 [ SRS ] Hs.1570 [ NCBI ]
CGAP (NCI)Hs.1570
Alternative Splicing : Fast-db (Paris)GSHG0020586
Alternative Splicing GalleryENSG00000196639
Gene ExpressionHRH1 [ NCBI-GEO ]   HRH1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35367 (SRS) P35367 (Uniprot)
NextProtP35367
With graphics : InterProP35367
Splice isoforms : SwissVarP35367(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam    Histamine_H1_recept   
Domains : Interpro (EBI)7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam    Histamine_H1_recept   
Related proteins : CluSTrP35367
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM3269
Blocks (Seattle)P35367
PDB (SRS)3RZE   
PDB (PDBSum)3RZE   
PDB (IMB)3RZE   
PDB (RSDB)3RZE   
Human Protein AtlasENSG00000196639
HPRD02544
IPIIPI00018147   IPI00924526   
Protein Interaction databases
DIP (DOE-UCLA)P35367
IntAct (EBI)P35367
FunCoupENSG00000196639
REACTOMEHRH1
Protein Interaction Database3269
BioGRIDHRH1
InParanoidP35367
Interologous Interaction database P35367
IntegromeDBHRH1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HRH1
SNP (GeneSNP Utah)HRH1
SNP : HGBaseHRH1
Genetic variants : HAPMAPHRH1
Somatic Mutations in Cancer : COSMICHRH1 
CONAN: Copy Number AnalysisHRH1 
Mutations and Diseases : HGMDHRH1
OMIM600167   
GENETests600167   
Disease Genetic AssociationHRH1
Huge Navigator HRH1 [HugePedia]  HRH1 [HugeCancerGEM]
Genomic VariantsHRH1  HRH1 [DGVbeta]
snp3D : Map Gene to Disease3269
General knowledge
Homologs : HomoloGeneHRH1
Homology/Alignments : Family Browser (UCSC)HRH1
Phylogenetic Trees/Animal Genes : TreeFamHRH1
Chemical/Protein Interactions : CTD3269
Chemical/Pharm GKB GenePA29456
Clinical trialHRH1
Cancer Resource (Charite)ENSG00000196639
Ontology : AmiGOG-protein coupled receptor activity  histamine receptor activity  nucleus  nucleolus  cytoplasm  plasma membrane  plasma membrane  integral to plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  synaptic transmission  response to gravity  negative regulation of steroid biosynthetic process  positive regulation of inositol trisphosphate biosynthetic process  positive regulation of nitric oxide biosynthetic process  positive regulation of vasoconstriction  inositol phosphate-mediated signaling  histamine binding  cellular response to histamine  
Ontology : EGO-EBIG-protein coupled receptor activity  histamine receptor activity  nucleus  nucleolus  cytoplasm  plasma membrane  plasma membrane  integral to plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  synaptic transmission  response to gravity  negative regulation of steroid biosynthetic process  positive regulation of inositol trisphosphate biosynthetic process  positive regulation of nitric oxide biosynthetic process  positive regulation of vasoconstriction  inositol phosphate-mediated signaling  histamine binding  cellular response to histamine  
Pathways : KEGGNeuroactive ligand-receptor interactionCalcium signaling pathway
Other databases
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
PubGeneHRH1
iHOPHRH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:28 CEST 2013
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