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HRH1 (histamine receptor H1)

Identity

Other namesH1-R
hisH1
HGNC (Hugo) HRH1
LocusID (NCBI) 3269
Location 3p25.3
Location_base_pair Starts at 11294385 and ends at 11304939 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HRH1   5182
Cards
Entrez_Gene (NCBI)HRH1  3269  histamine receptor H1
GeneCards (Weizmann)HRH1
Ensembl (Hinxton)ENSG00000196639 [Gene_View]  chr3:11294385-11304939 [Contig_View]  HRH1 [Vega]
ICGC DataPortalENSG00000196639
cBioPortalHRH1
AceView (NCBI)HRH1
Genatlas (Paris)HRH1
WikiGenes3269
SOURCE (Princeton)NM_000861 NM_001098211 NM_001098212 NM_001098213
Genomic and cartography
GoldenPath (UCSC)HRH1  -  3p25.3   chr3:11294385-11304939 +  3p25.3   [Description]    (hg19-Feb_2009)
EnsemblHRH1 - 3p25.3 [CytoView]
Mapping of homologs : NCBIHRH1 [Mapview]
OMIM600167   
Gene and transcription
Genbank (Entrez)AF026261 AK289412 AK292157 AK312879 AY136743
RefSeq transcript (Entrez)NM_000861 NM_001098211 NM_001098212 NM_001098213
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004929309
Consensus coding sequences : CCDS (NCBI)HRH1
Cluster EST : UnigeneHs.1570 [ NCBI ]
CGAP (NCI)Hs.1570
Alternative Splicing : Fast-db (Paris)GSHG0020586
Alternative Splicing GalleryENSG00000196639
Gene ExpressionHRH1 [ NCBI-GEO ]     HRH1 [ SEEK ]   HRH1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35367 (Uniprot)
NextProtP35367  [Medical]
With graphics : InterProP35367
Splice isoforms : SwissVarP35367 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn [organisation]   GPCR_Rhodpsn_7TM [organisation]   Histamine_H1_rcpt [organisation]  
Related proteins : CluSTrP35367
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations3269
Blocks (Seattle)P35367
PDB (SRS)3RZE   
PDB (PDBSum)3RZE   
PDB (IMB)3RZE   
PDB (RSDB)3RZE   
Human Protein AtlasENSG00000196639 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP35367
HPRD02544
IPIIPI00018147   IPI00924526   
Protein Interaction databases
DIP (DOE-UCLA)P35367
IntAct (EBI)P35367
FunCoupENSG00000196639
BioGRIDHRH1
InParanoidP35367
Interologous Interaction database P35367
IntegromeDBHRH1
STRING (EMBL)HRH1
Ontologies - Pathways
Ontology : AmiGOG-protein coupled receptor activity  histamine receptor activity  plasma membrane  integral component of plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  memory  visual learning  positive regulation of inositol trisphosphate biosynthetic process  regulation of vascular permeability  positive regulation of vasoconstriction  inositol phosphate-mediated signaling  regulation of synaptic plasticity  eosinophil chemotaxis  cellular response to histamine  
Ontology : EGO-EBIG-protein coupled receptor activity  histamine receptor activity  plasma membrane  integral component of plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  memory  visual learning  positive regulation of inositol trisphosphate biosynthetic process  regulation of vascular permeability  positive regulation of vasoconstriction  inositol phosphate-mediated signaling  regulation of synaptic plasticity  eosinophil chemotaxis  cellular response to histamine  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
Protein Interaction DatabaseHRH1
Wikipedia pathwaysHRH1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HRH1
snp3D : Map Gene to Disease3269
SNP (GeneSNP Utah)HRH1
SNP : HGBaseHRH1
Genetic variants : HAPMAPHRH1
Exome VariantHRH1
1000_GenomesHRH1 
ICGC programENSG00000196639 
Somatic Mutations in Cancer : COSMICHRH1 
CONAN: Copy Number AnalysisHRH1 
Mutations and Diseases : HGMDHRH1
Genomic VariantsHRH1  HRH1 [DGVbeta]
dbVarHRH1
ClinVarHRH1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600167   
MedgenHRH1
GENETestsHRH1
Disease Genetic AssociationHRH1
Huge Navigator HRH1 [HugePedia]  HRH1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneHRH1
Homology/Alignments : Family Browser (UCSC)HRH1
Phylogenetic Trees/Animal Genes : TreeFamHRH1
Chemical/Protein Interactions : CTD3269
Chemical/Pharm GKB GenePA29456
Clinical trialHRH1
Cancer Resource (Charite)ENSG00000196639
Other databases
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
CoreMineHRH1
iHOPHRH1
OncoSearchHRH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:58:35 CEST 2014

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