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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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HRH1 (histamine receptor H1)

Identity

Other namesH1-R
hisH1
HGNC (Hugo) HRH1
LocusID (NCBI) 3269
Location 3p25.3
Location_base_pair Starts at 11294385 and ends at 11304939 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HRH1   5182
Cards
Entrez_Gene (NCBI)HRH1  3269  histamine receptor H1
GeneCards (Weizmann)HRH1
Ensembl hg19 (Hinxton)ENSG00000196639 [Gene_View]  chr3:11294385-11304939 [Contig_View]  HRH1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196639 [Gene_View]  chr3:11294385-11304939 [Contig_View]  HRH1 [Vega]
ICGC DataPortalENSG00000196639
cBioPortalHRH1
AceView (NCBI)HRH1
Genatlas (Paris)HRH1
WikiGenes3269
SOURCE (Princeton)HRH1
Genomic and cartography
GoldenPath hg19 (UCSC)HRH1  -     chr3:11294385-11304939 +  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HRH1  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblHRH1 - 3p25.3 [CytoView hg19]  HRH1 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIHRH1 [Mapview hg19]  HRH1 [Mapview hg38]
OMIM600167   
Gene and transcription
Genbank (Entrez)AF026261 AK289412 AK292157 AK312879 AY136743
RefSeq transcript (Entrez)NM_000861 NM_001098211 NM_001098212 NM_001098213
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004929309
Consensus coding sequences : CCDS (NCBI)HRH1
Cluster EST : UnigeneHs.1570 [ NCBI ]
CGAP (NCI)Hs.1570
Alternative Splicing : Fast-db (Paris)GSHG0020586
Alternative Splicing GalleryENSG00000196639
Gene ExpressionHRH1 [ NCBI-GEO ]     HRH1 [ SEEK ]   HRH1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35367 (Uniprot)
NextProtP35367  [Medical]
With graphics : InterProP35367
Splice isoforms : SwissVarP35367 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Histamine_H1_rcpt   
Related proteins : CluSTrP35367
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations3269
Blocks (Seattle)P35367
PDB (SRS)3RZE   
PDB (PDBSum)3RZE   
PDB (IMB)3RZE   
PDB (RSDB)3RZE   
Human Protein AtlasENSG00000196639
Peptide AtlasP35367
HPRD02544
IPIIPI00018147   IPI00924526   
Protein Interaction databases
DIP (DOE-UCLA)P35367
IntAct (EBI)P35367
FunCoupENSG00000196639
BioGRIDHRH1
IntegromeDBHRH1
STRING (EMBL)HRH1
Ontologies - Pathways
QuickGOP35367
Ontology : AmiGOG-protein coupled receptor activity  histamine receptor activity  plasma membrane  integral component of plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  memory  visual learning  positive regulation of inositol trisphosphate biosynthetic process  regulation of vascular permeability  positive regulation of vasoconstriction  inositol phosphate-mediated signaling  regulation of synaptic plasticity  eosinophil chemotaxis  cellular response to histamine  
Ontology : EGO-EBIG-protein coupled receptor activity  histamine receptor activity  plasma membrane  integral component of plasma membrane  inflammatory response  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  memory  visual learning  positive regulation of inositol trisphosphate biosynthetic process  regulation of vascular permeability  positive regulation of vasoconstriction  inositol phosphate-mediated signaling  regulation of synaptic plasticity  eosinophil chemotaxis  cellular response to histamine  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
Protein Interaction DatabaseHRH1
DoCM (Curated mutations)HRH1
Wikipedia pathwaysHRH1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHRH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HRH1
dbVarHRH1
ClinVarHRH1
1000_GenomesHRH1 
Exome Variant ServerHRH1
SNP (GeneSNP Utah)HRH1
SNP : HGBaseHRH1
Genetic variants : HAPMAPHRH1
Genomic Variants (DGV)HRH1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000196639 
Somatic Mutations in Cancer : COSMICHRH1 
CONAN: Copy Number AnalysisHRH1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:11294385-11304939
Mutations and Diseases : HGMDHRH1
OMIM600167   
MedgenHRH1
NextProtP35367 [Medical]
GENETestsHRH1
Disease Genetic AssociationHRH1
Huge Navigator HRH1 [HugePedia]  HRH1 [HugeCancerGEM]
snp3D : Map Gene to Disease3269
DGIdb (Drug Gene Interaction db)HRH1
General knowledge
Homologs : HomoloGeneHRH1
Homology/Alignments : Family Browser (UCSC)HRH1
Phylogenetic Trees/Animal Genes : TreeFamHRH1
Chemical/Protein Interactions : CTD3269
Chemical/Pharm GKB GenePA29456
Clinical trialHRH1
Cancer Resource (Charite)ENSG00000196639
Other databases
Probes
Litterature
PubMed86 Pubmed reference(s) in Entrez
CoreMineHRH1
GoPubMedHRH1
iHOPHRH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:14:59 CET 2015

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