Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HRNR (hornerin)

Identity

Alias_symbol (synonym)S100a18
S100A16
FLG3
Other alias
HGNC (Hugo) HRNR
LocusID (NCBI) 388697
Atlas_Id 53156
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152212076 and ends at 152224196 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HRNR   20846
Cards
Entrez_Gene (NCBI)HRNR  388697  hornerin
AliasesFLG3; S100A16; S100a18
GeneCards (Weizmann)HRNR
Ensembl hg19 (Hinxton)ENSG00000197915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197915 [Gene_View]  chr1:152212076-152224196 [Contig_View]  HRNR [Vega]
ICGC DataPortalENSG00000197915
TCGA cBioPortalHRNR
AceView (NCBI)HRNR
Genatlas (Paris)HRNR
WikiGenes388697
SOURCE (Princeton)HRNR
Genetics Home Reference (NIH)HRNR
Genomic and cartography
GoldenPath hg38 (UCSC)HRNR  -     chr1:152212076-152224196 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HRNR  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblHRNR - 1q21.3 [CytoView hg19]  HRNR - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIHRNR [Mapview hg19]  HRNR [Mapview hg38]
OMIM616293   
Gene and transcription
Genbank (Entrez)AB104446 AB180729 AY396741 BR000036
RefSeq transcript (Entrez)NM_001009931
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HRNR
Cluster EST : UnigeneHs.490162 [ NCBI ]
CGAP (NCI)Hs.490162
Alternative Splicing GalleryENSG00000197915
Gene ExpressionHRNR [ NCBI-GEO ]   HRNR [ EBI - ARRAY_EXPRESS ]   HRNR [ SEEK ]   HRNR [ MEM ]
Gene Expression Viewer (FireBrowse)HRNR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388697
GTEX Portal (Tissue expression)HRNR
Human Protein AtlasENSG00000197915-HRNR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YZ3
Splice isoforms : SwissVarQ86YZ3
PhosPhoSitePlusQ86YZ3
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    S100_CABP (PS00303)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    HRNR    S-100_dom    S100/CaBP-9k_CS    S100_Ca-bd_sub   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Domain families : Smart (EMBL)S_100 (SM01394)  
Conserved Domain (NCBI)HRNR
DMDM Disease mutations388697
Blocks (Seattle)HRNR
SuperfamilyQ86YZ3
Human Protein Atlas [tissue]ENSG00000197915-HRNR [tissue]
Peptide AtlasQ86YZ3
HPRD17114
IPIIPI00398625   
Protein Interaction databases
DIP (DOE-UCLA)Q86YZ3
IntAct (EBI)Q86YZ3
FunCoupENSG00000197915
BioGRIDHRNR
STRING (EMBL)HRNR
ZODIACHRNR
Ontologies - Pathways
QuickGOQ86YZ3
Ontology : AmiGOcornified envelope  calcium ion binding  extracellular region  nucleus  cytoplasm  keratinization  azurophil granule lumen  keratohyalin granule  cell envelope organization  neutrophil degranulation  transition metal ion binding  perinuclear region of cytoplasm  establishment of skin barrier  extracellular exosome  
Ontology : EGO-EBIcornified envelope  calcium ion binding  extracellular region  nucleus  cytoplasm  keratinization  azurophil granule lumen  keratohyalin granule  cell envelope organization  neutrophil degranulation  transition metal ion binding  perinuclear region of cytoplasm  establishment of skin barrier  extracellular exosome  
NDEx NetworkHRNR
Atlas of Cancer Signalling NetworkHRNR
Wikipedia pathwaysHRNR
Orthology - Evolution
OrthoDB388697
GeneTree (enSembl)ENSG00000197915
Phylogenetic Trees/Animal Genes : TreeFamHRNR
HOVERGENQ86YZ3
HOGENOMQ86YZ3
Homologs : HomoloGeneHRNR
Homology/Alignments : Family Browser (UCSC)HRNR
Gene fusions - Rearrangements
Tumor Fusion PortalHRNR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHRNR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HRNR
dbVarHRNR
ClinVarHRNR
1000_GenomesHRNR 
Exome Variant ServerHRNR
ExAC (Exome Aggregation Consortium)ENSG00000197915
GNOMAD BrowserENSG00000197915
Genetic variants : HAPMAP388697
Genomic Variants (DGV)HRNR [DGVbeta]
DECIPHERHRNR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHRNR 
Mutations
ICGC Data PortalHRNR 
TCGA Data PortalHRNR 
Broad Tumor PortalHRNR
OASIS PortalHRNR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHRNR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHRNR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HRNR
DgiDB (Drug Gene Interaction Database)HRNR
DoCM (Curated mutations)HRNR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HRNR (select a term)
intoGenHRNR
Cancer3DHRNR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616293   
Orphanet
DisGeNETHRNR
MedgenHRNR
Genetic Testing Registry HRNR
NextProtQ86YZ3 [Medical]
TSGene388697
GENETestsHRNR
Target ValidationHRNR
Huge Navigator HRNR [HugePedia]
snp3D : Map Gene to Disease388697
BioCentury BCIQHRNR
ClinGenHRNR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388697
Chemical/Pharm GKB GenePA134936141
Clinical trialHRNR
Miscellaneous
canSAR (ICR)HRNR (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHRNR
EVEXHRNR
GoPubMedHRNR
iHOPHRNR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:16:51 CET 2017

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