Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HS1BP3-IT1 (HS1BP3 intronic transcript 1)

Identity

Alias_namesHS1BP3 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) HS1BP3-IT1
LocusID (NCBI) 100874343
Atlas_Id 64426
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 20590775 and ends at 20592548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS1BP3-IT1   41474
Cards
Entrez_Gene (NCBI)HS1BP3-IT1  100874343  HS1BP3 intronic transcript 1
Aliases
GeneCards (Weizmann)HS1BP3-IT1
Ensembl hg19 (Hinxton)ENSG00000231948 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231948 [Gene_View]  chr2:20590775-20592548 [Contig_View]  HS1BP3-IT1 [Vega]
ICGC DataPortalENSG00000231948
TCGA cBioPortalHS1BP3-IT1
AceView (NCBI)HS1BP3-IT1
Genatlas (Paris)HS1BP3-IT1
WikiGenes100874343
SOURCE (Princeton)HS1BP3-IT1
Genetics Home Reference (NIH)HS1BP3-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)HS1BP3-IT1  -     chr2:20590775-20592548 -  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HS1BP3-IT1  -     2p24.1   [Description]    (hg19-Feb_2009)
EnsemblHS1BP3-IT1 - 2p24.1 [CytoView hg19]  HS1BP3-IT1 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBIHS1BP3-IT1 [Mapview hg19]  HS1BP3-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ010717 BQ013798
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HS1BP3-IT1
Cluster EST : UnigeneHs.591546 [ NCBI ]
CGAP (NCI)Hs.591546
Alternative Splicing GalleryENSG00000231948
Gene ExpressionHS1BP3-IT1 [ NCBI-GEO ]   HS1BP3-IT1 [ EBI - ARRAY_EXPRESS ]   HS1BP3-IT1 [ SEEK ]   HS1BP3-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)HS1BP3-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874343
GTEX Portal (Tissue expression)HS1BP3-IT1
Human Protein AtlasENSG00000231948-HS1BP3-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HS1BP3-IT1
DMDM Disease mutations100874343
Blocks (Seattle)HS1BP3-IT1
Human Protein Atlas [tissue]ENSG00000231948-HS1BP3-IT1 [tissue]
Protein Interaction databases
FunCoupENSG00000231948
BioGRIDHS1BP3-IT1
STRING (EMBL)HS1BP3-IT1
ZODIACHS1BP3-IT1
Ontologies - Pathways
Huge Navigator HS1BP3-IT1 [HugePedia]
snp3D : Map Gene to Disease100874343
BioCentury BCIQHS1BP3-IT1
ClinGenHS1BP3-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874343
Clinical trialHS1BP3-IT1
Miscellaneous
canSAR (ICR)HS1BP3-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS1BP3-IT1
EVEXHS1BP3-IT1
GoPubMedHS1BP3-IT1
iHOPHS1BP3-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:42 CET 2017

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