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HS3ST2 (heparan sulfate-glucosamine 3-sulfotransferase 2)

Identity

Alias_namesheparan sulfate (glucosamine) 3-O-sulfotransferase 2
Alias_symbol (synonym)3OST2
HGNC (Hugo) HS3ST2
LocusID (NCBI) 9956
Atlas_Id 40866
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22825860 and ends at 22927659 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS3ST2   5195
Cards
Entrez_Gene (NCBI)HS3ST2  9956  heparan sulfate-glucosamine 3-sulfotransferase 2
Aliases30ST2; 3OST2
GeneCards (Weizmann)HS3ST2
Ensembl hg19 (Hinxton)ENSG00000122254 [Gene_View]  chr16:22825860-22927659 [Contig_View]  HS3ST2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122254 [Gene_View]  chr16:22825860-22927659 [Contig_View]  HS3ST2 [Vega]
ICGC DataPortalENSG00000122254
TCGA cBioPortalHS3ST2
AceView (NCBI)HS3ST2
Genatlas (Paris)HS3ST2
WikiGenes9956
SOURCE (Princeton)HS3ST2
Genetics Home Reference (NIH)HS3ST2
Genomic and cartography
GoldenPath hg19 (UCSC)HS3ST2  -     chr16:22825860-22927659 +  16p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HS3ST2  -     16p12.2   [Description]    (hg38-Dec_2013)
EnsemblHS3ST2 - 16p12.2 [CytoView hg19]  HS3ST2 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIHS3ST2 [Mapview hg19]  HS3ST2 [Mapview hg38]
OMIM604056   
Gene and transcription
Genbank (Entrez)AB209794 AF105374 AF105375 AK313463 AY359095
RefSeq transcript (Entrez)NM_006043
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)HS3ST2
Cluster EST : UnigeneHs.733610 [ NCBI ]
CGAP (NCI)Hs.733610
Alternative Splicing GalleryENSG00000122254
Gene ExpressionHS3ST2 [ NCBI-GEO ]   HS3ST2 [ EBI - ARRAY_EXPRESS ]   HS3ST2 [ SEEK ]   HS3ST2 [ MEM ]
Gene Expression Viewer (FireBrowse)HS3ST2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9956
GTEX Portal (Tissue expression)HS3ST2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y278   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y278  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y278
Splice isoforms : SwissVarQ9Y278
Catalytic activity : Enzyme2.8.2.29 [ Enzyme-Expasy ]   2.8.2.292.8.2.29 [ IntEnz-EBI ]   2.8.2.29 [ BRENDA ]   2.8.2.29 [ KEGG ]   
PhosPhoSitePlusQ9Y278
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)HS3ST2
DMDM Disease mutations9956
Blocks (Seattle)HS3ST2
SuperfamilyQ9Y278
Human Protein AtlasENSG00000122254
Peptide AtlasQ9Y278
HPRD04957
IPIIPI00005710   IPI00556396   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y278
IntAct (EBI)Q9Y278
FunCoupENSG00000122254
BioGRIDHS3ST2
STRING (EMBL)HS3ST2
ZODIACHS3ST2
Ontologies - Pathways
QuickGOQ9Y278
Ontology : AmiGOGolgi membrane  glycosaminoglycan biosynthetic process  circadian rhythm  sulfotransferase activity  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  integral component of membrane  [heparan sulfate]-glucosamine 3-sulfotransferase 2 activity  
Ontology : EGO-EBIGolgi membrane  glycosaminoglycan biosynthetic process  circadian rhythm  sulfotransferase activity  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  integral component of membrane  [heparan sulfate]-glucosamine 3-sulfotransferase 2 activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkHS3ST2
Atlas of Cancer Signalling NetworkHS3ST2
Wikipedia pathwaysHS3ST2
Orthology - Evolution
OrthoDB9956
GeneTree (enSembl)ENSG00000122254
Phylogenetic Trees/Animal Genes : TreeFamHS3ST2
HOVERGENQ9Y278
HOGENOMQ9Y278
Homologs : HomoloGeneHS3ST2
Homology/Alignments : Family Browser (UCSC)HS3ST2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS3ST2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HS3ST2
dbVarHS3ST2
ClinVarHS3ST2
1000_GenomesHS3ST2 
Exome Variant ServerHS3ST2
ExAC (Exome Aggregation Consortium)HS3ST2 (select the gene name)
Genetic variants : HAPMAP9956
Genomic Variants (DGV)HS3ST2 [DGVbeta]
DECIPHER (Syndromes)16:22825860-22927659  ENSG00000122254
CONAN: Copy Number AnalysisHS3ST2 
Mutations
ICGC Data PortalHS3ST2 
TCGA Data PortalHS3ST2 
Broad Tumor PortalHS3ST2
OASIS PortalHS3ST2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS3ST2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHS3ST2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS3ST2
DgiDB (Drug Gene Interaction Database)HS3ST2
DoCM (Curated mutations)HS3ST2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS3ST2 (select a term)
intoGenHS3ST2
Cancer3DHS3ST2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604056   
Orphanet
MedgenHS3ST2
Genetic Testing Registry HS3ST2
NextProtQ9Y278 [Medical]
TSGene9956
GENETestsHS3ST2
Huge Navigator HS3ST2 [HugePedia]
snp3D : Map Gene to Disease9956
BioCentury BCIQHS3ST2
ClinGenHS3ST2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9956
Chemical/Pharm GKB GenePA29468
Clinical trialHS3ST2
Miscellaneous
canSAR (ICR)HS3ST2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS3ST2
EVEXHS3ST2
GoPubMedHS3ST2
iHOPHS3ST2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:39:49 CET 2016

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