Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HS3ST2 (heparan sulfate (glucosamine) 3-O-sulfotransferase 2)

Identity

Other names30ST2
3OST2
HGNC (Hugo) HS3ST2
LocusID (NCBI) 9956
Location 16p12.2
Location_base_pair Starts at 22825860 and ends at 22927659 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HS3ST2   5195
Cards
Entrez_Gene (NCBI)HS3ST2  9956  heparan sulfate (glucosamine) 3-O-sulfotransferase 2
GeneCards (Weizmann)HS3ST2
Ensembl (Hinxton)ENSG00000122254 [Gene_View]  chr16:22825860-22927659 [Contig_View]  HS3ST2 [Vega]
ICGC DataPortalENSG00000122254
cBioPortalHS3ST2
AceView (NCBI)HS3ST2
Genatlas (Paris)HS3ST2
WikiGenes9956
SOURCE (Princeton)NM_006043
Genomic and cartography
GoldenPath (UCSC)HS3ST2  -  16p12.2   chr16:22825860-22927659 +  16p12.2   [Description]    (hg19-Feb_2009)
EnsemblHS3ST2 - 16p12.2 [CytoView]
Mapping of homologs : NCBIHS3ST2 [Mapview]
OMIM604056   
Gene and transcription
Genbank (Entrez)AB209794 AF105374 AF105375 AK313463 AY359095
RefSeq transcript (Entrez)NM_006043
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_187260 NW_001838400 NW_004929400
Consensus coding sequences : CCDS (NCBI)HS3ST2
Cluster EST : UnigeneHs.733610 [ NCBI ]
CGAP (NCI)Hs.733610
Alternative Splicing : Fast-db (Paris)GSHG0011032
Alternative Splicing GalleryENSG00000122254
Gene ExpressionHS3ST2 [ NCBI-GEO ]     HS3ST2 [ SEEK ]   HS3ST2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y278 (Uniprot)
NextProtQ9Y278  [Medical]
With graphics : InterProQ9Y278
Splice isoforms : SwissVarQ9Y278 (Swissvar)
Catalytic activity : Enzyme2.8.2.29 [ Enzyme-Expasy ]   2.8.2.292.8.2.29 [ IntEnz-EBI ]   2.8.2.29 [ BRENDA ]   2.8.2.29 [ KEGG ]   
Domains : Interpro (EBI)P-loop_NTPase [organisation]   Sulfotransferase_dom [organisation]  
Related proteins : CluSTrQ9Y278
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
DMDM Disease mutations9956
Blocks (Seattle)Q9Y278
Human Protein AtlasENSG00000122254 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9Y278
HPRD04957
IPIIPI00005710   IPI00556396   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y278
IntAct (EBI)Q9Y278
FunCoupENSG00000122254
BioGRIDHS3ST2
InParanoidQ9Y278
Interologous Interaction database Q9Y278
IntegromeDBHS3ST2
STRING (EMBL)HS3ST2
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  carbohydrate metabolic process  glycosaminoglycan biosynthetic process  circadian rhythm  sulfotransferase activity  integral component of membrane  glycosaminoglycan metabolic process  [heparan sulfate]-glucosamine 3-sulfotransferase 2 activity  small molecule metabolic process  
Ontology : EGO-EBIGolgi membrane  carbohydrate metabolic process  glycosaminoglycan biosynthetic process  circadian rhythm  sulfotransferase activity  integral component of membrane  glycosaminoglycan metabolic process  [heparan sulfate]-glucosamine 3-sulfotransferase 2 activity  small molecule metabolic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
Protein Interaction DatabaseHS3ST2
Wikipedia pathwaysHS3ST2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HS3ST2
snp3D : Map Gene to Disease9956
SNP (GeneSNP Utah)HS3ST2
SNP : HGBaseHS3ST2
Genetic variants : HAPMAPHS3ST2
Exome VariantHS3ST2
1000_GenomesHS3ST2 
ICGC programENSG00000122254 
Somatic Mutations in Cancer : COSMICHS3ST2 
CONAN: Copy Number AnalysisHS3ST2 
Mutations and Diseases : HGMDHS3ST2
Genomic VariantsHS3ST2  HS3ST2 [DGVbeta]
dbVarHS3ST2
ClinVarHS3ST2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604056   
MedgenHS3ST2
GENETestsHS3ST2
Disease Genetic AssociationHS3ST2
Huge Navigator HS3ST2 [HugePedia]  HS3ST2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneHS3ST2
Homology/Alignments : Family Browser (UCSC)HS3ST2
Phylogenetic Trees/Animal Genes : TreeFamHS3ST2
Chemical/Protein Interactions : CTD9956
Chemical/Pharm GKB GenePA29468
Clinical trialHS3ST2
Cancer Resource (Charite)ENSG00000122254
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineHS3ST2
iHOPHS3ST2
OncoSearchHS3ST2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:58:37 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.