Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HS3ST3A1 (heparan sulfate-glucosamine 3-sulfotransferase 3A1)

Identity

Other alias3-OST-3A
3OST3A1
HGNC (Hugo) HS3ST3A1
LocusID (NCBI) 9955
Atlas_Id 56979
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 13494032 and ends at 13601942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HS3ST3A1 (17p12) / GSTO1 (10q25.1)HS3ST3A1 (17p12) / HS3ST3B1 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS3ST3A1   5196
Cards
Entrez_Gene (NCBI)HS3ST3A1  9955  heparan sulfate-glucosamine 3-sulfotransferase 3A1
Aliases3-OST-3A; 3OST3A1
GeneCards (Weizmann)HS3ST3A1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:13494032-13601942 [Contig_View]  HS3ST3A1 [Vega]
TCGA cBioPortalHS3ST3A1
AceView (NCBI)HS3ST3A1
Genatlas (Paris)HS3ST3A1
WikiGenes9955
SOURCE (Princeton)HS3ST3A1
Genetics Home Reference (NIH)HS3ST3A1
Genomic and cartography
GoldenPath hg38 (UCSC)HS3ST3A1  -     chr17:13494032-13601942 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HS3ST3A1  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblHS3ST3A1 - 17p12 [CytoView hg19]  HS3ST3A1 - 17p12 [CytoView hg38]
Mapping of homologs : NCBIHS3ST3A1 [Mapview hg19]  HS3ST3A1 [Mapview hg38]
OMIM604057   
Gene and transcription
Genbank (Entrez)AA746890 AF105376 AK292047 AY358838 BC044647
RefSeq transcript (Entrez)NM_006042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HS3ST3A1
Cluster EST : UnigeneHs.562745 [ NCBI ]
CGAP (NCI)Hs.562745
Gene ExpressionHS3ST3A1 [ NCBI-GEO ]   HS3ST3A1 [ EBI - ARRAY_EXPRESS ]   HS3ST3A1 [ SEEK ]   HS3ST3A1 [ MEM ]
Gene Expression Viewer (FireBrowse)HS3ST3A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9955
GTEX Portal (Tissue expression)HS3ST3A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y663   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y663  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y663
Splice isoforms : SwissVarQ9Y663
Catalytic activity : Enzyme2.8.2.30 [ Enzyme-Expasy ]   2.8.2.302.8.2.30 [ IntEnz-EBI ]   2.8.2.30 [ BRENDA ]   2.8.2.30 [ KEGG ]   
PhosPhoSitePlusQ9Y663
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)HS3ST3A1
DMDM Disease mutations9955
Blocks (Seattle)HS3ST3A1
PDB (SRS)1T8T    1T8U   
PDB (PDBSum)1T8T    1T8U   
PDB (IMB)1T8T    1T8U   
PDB (RSDB)1T8T    1T8U   
Structural Biology KnowledgeBase1T8T    1T8U   
SCOP (Structural Classification of Proteins)1T8T    1T8U   
CATH (Classification of proteins structures)1T8T    1T8U   
SuperfamilyQ9Y663
Peptide AtlasQ9Y663
IPIIPI00005709   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y663
IntAct (EBI)Q9Y663
BioGRIDHS3ST3A1
STRING (EMBL)HS3ST3A1
ZODIACHS3ST3A1
Ontologies - Pathways
QuickGOQ9Y663
Ontology : AmiGOGolgi membrane  glycosaminoglycan biosynthetic process  sulfotransferase activity  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  integral component of membrane  [heparan sulfate]-glucosamine 3-sulfotransferase 3 activity  
Ontology : EGO-EBIGolgi membrane  glycosaminoglycan biosynthetic process  sulfotransferase activity  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  integral component of membrane  [heparan sulfate]-glucosamine 3-sulfotransferase 3 activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkHS3ST3A1
Atlas of Cancer Signalling NetworkHS3ST3A1
Wikipedia pathwaysHS3ST3A1
Orthology - Evolution
OrthoDB9955
Phylogenetic Trees/Animal Genes : TreeFamHS3ST3A1
HOVERGENQ9Y663
HOGENOMQ9Y663
Homologs : HomoloGeneHS3ST3A1
Homology/Alignments : Family Browser (UCSC)HS3ST3A1
Gene fusions - Rearrangements
Fusion: Tumor Portal HS3ST3A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS3ST3A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HS3ST3A1
dbVarHS3ST3A1
ClinVarHS3ST3A1
1000_GenomesHS3ST3A1 
Exome Variant ServerHS3ST3A1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP9955
Genomic Variants (DGV)HS3ST3A1 [DGVbeta]
DECIPHERHS3ST3A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHS3ST3A1 
Mutations
ICGC Data PortalHS3ST3A1 
TCGA Data PortalHS3ST3A1 
Broad Tumor PortalHS3ST3A1
OASIS PortalHS3ST3A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS3ST3A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHS3ST3A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS3ST3A1
DgiDB (Drug Gene Interaction Database)HS3ST3A1
DoCM (Curated mutations)HS3ST3A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS3ST3A1 (select a term)
intoGenHS3ST3A1
Cancer3DHS3ST3A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604057   
Orphanet
MedgenHS3ST3A1
Genetic Testing Registry HS3ST3A1
NextProtQ9Y663 [Medical]
TSGene9955
GENETestsHS3ST3A1
Target ValidationHS3ST3A1
Huge Navigator HS3ST3A1 [HugePedia]
snp3D : Map Gene to Disease9955
BioCentury BCIQHS3ST3A1
ClinGenHS3ST3A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9955
Chemical/Pharm GKB GenePA29469
Clinical trialHS3ST3A1
Miscellaneous
canSAR (ICR)HS3ST3A1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS3ST3A1
EVEXHS3ST3A1
GoPubMedHS3ST3A1
iHOPHS3ST3A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:53:29 CET 2017

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