Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HS3ST3B1 (heparan sulfate-glucosamine 3-sulfotransferase 3B1)

Identity

Alias_namesheparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
Alias_symbol (synonym)3OST3B1
30ST3B1
Other alias3-OST-3B
h3-OST-3B
HGNC (Hugo) HS3ST3B1
LocusID (NCBI) 9953
Atlas_Id 52598
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 14301050 and ends at 14349404 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HS3ST3A1 (17p12) / HS3ST3B1 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS3ST3B1   5198
Cards
Entrez_Gene (NCBI)HS3ST3B1  9953  heparan sulfate-glucosamine 3-sulfotransferase 3B1
Aliases3-OST-3B; 3OST3B1; h3-OST-3B
GeneCards (Weizmann)HS3ST3B1
Ensembl hg19 (Hinxton)ENSG00000125430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125430 [Gene_View]  chr17:14301050-14349404 [Contig_View]  HS3ST3B1 [Vega]
ICGC DataPortalENSG00000125430
TCGA cBioPortalHS3ST3B1
AceView (NCBI)HS3ST3B1
Genatlas (Paris)HS3ST3B1
WikiGenes9953
SOURCE (Princeton)HS3ST3B1
Genetics Home Reference (NIH)HS3ST3B1
Genomic and cartography
GoldenPath hg38 (UCSC)HS3ST3B1  -     chr17:14301050-14349404 +  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HS3ST3B1  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblHS3ST3B1 - 17p12 [CytoView hg19]  HS3ST3B1 - 17p12 [CytoView hg38]
Mapping of homologs : NCBIHS3ST3B1 [Mapview hg19]  HS3ST3B1 [Mapview hg38]
OMIM604058   
Gene and transcription
Genbank (Entrez)AF105377 AK023723 BC063301 BC069664 BC069725
RefSeq transcript (Entrez)NM_006041
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HS3ST3B1
Cluster EST : UnigeneHs.48384 [ NCBI ]
CGAP (NCI)Hs.48384
Alternative Splicing GalleryENSG00000125430
Gene ExpressionHS3ST3B1 [ NCBI-GEO ]   HS3ST3B1 [ EBI - ARRAY_EXPRESS ]   HS3ST3B1 [ SEEK ]   HS3ST3B1 [ MEM ]
Gene Expression Viewer (FireBrowse)HS3ST3B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9953
GTEX Portal (Tissue expression)HS3ST3B1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y662   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y662  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y662
Splice isoforms : SwissVarQ9Y662
Catalytic activity : Enzyme2.8.2.30 [ Enzyme-Expasy ]   2.8.2.302.8.2.30 [ IntEnz-EBI ]   2.8.2.30 [ BRENDA ]   2.8.2.30 [ KEGG ]   
PhosPhoSitePlusQ9Y662
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)HS3ST3B1
DMDM Disease mutations9953
Blocks (Seattle)HS3ST3B1
SuperfamilyQ9Y662
Human Protein AtlasENSG00000125430
Peptide AtlasQ9Y662
HPRD04959
IPIIPI00005708   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y662
IntAct (EBI)Q9Y662
FunCoupENSG00000125430
BioGRIDHS3ST3B1
STRING (EMBL)HS3ST3B1
ZODIACHS3ST3B1
Ontologies - Pathways
QuickGOQ9Y662
Ontology : AmiGOGolgi membrane  integral component of plasma membrane  glycosaminoglycan biosynthetic process  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process, enzymatic modification  [heparan sulfate]-glucosamine 3-sulfotransferase 3 activity  
Ontology : EGO-EBIGolgi membrane  integral component of plasma membrane  glycosaminoglycan biosynthetic process  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process, enzymatic modification  [heparan sulfate]-glucosamine 3-sulfotransferase 3 activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkHS3ST3B1
Atlas of Cancer Signalling NetworkHS3ST3B1
Wikipedia pathwaysHS3ST3B1
Orthology - Evolution
OrthoDB9953
GeneTree (enSembl)ENSG00000125430
Phylogenetic Trees/Animal Genes : TreeFamHS3ST3B1
HOVERGENQ9Y662
HOGENOMQ9Y662
Homologs : HomoloGeneHS3ST3B1
Homology/Alignments : Family Browser (UCSC)HS3ST3B1
Gene fusions - Rearrangements
Fusion Cancer (Beijing)HS3ST3A1 [17p12]  -  HS3ST3B1 [17p12]  [FUSC001625]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS3ST3B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HS3ST3B1
dbVarHS3ST3B1
ClinVarHS3ST3B1
1000_GenomesHS3ST3B1 
Exome Variant ServerHS3ST3B1
ExAC (Exome Aggregation Consortium)HS3ST3B1 (select the gene name)
Genetic variants : HAPMAP9953
Genomic Variants (DGV)HS3ST3B1 [DGVbeta]
DECIPHERHS3ST3B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHS3ST3B1 
Mutations
ICGC Data PortalHS3ST3B1 
TCGA Data PortalHS3ST3B1 
Broad Tumor PortalHS3ST3B1
OASIS PortalHS3ST3B1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS3ST3B1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHS3ST3B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS3ST3B1
DgiDB (Drug Gene Interaction Database)HS3ST3B1
DoCM (Curated mutations)HS3ST3B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS3ST3B1 (select a term)
intoGenHS3ST3B1
Cancer3DHS3ST3B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604058   
Orphanet
MedgenHS3ST3B1
Genetic Testing Registry HS3ST3B1
NextProtQ9Y662 [Medical]
TSGene9953
GENETestsHS3ST3B1
Target ValidationHS3ST3B1
Huge Navigator HS3ST3B1 [HugePedia]
snp3D : Map Gene to Disease9953
BioCentury BCIQHS3ST3B1
ClinGenHS3ST3B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9953
Chemical/Pharm GKB GenePA29471
Clinical trialHS3ST3B1
Miscellaneous
canSAR (ICR)HS3ST3B1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS3ST3B1
EVEXHS3ST3B1
GoPubMedHS3ST3B1
iHOPHS3ST3B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:37:32 CEST 2017

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