Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HS3ST6 (heparan sulfate-glucosamine 3-sulfotransferase 6)

Identity

Alias_namesHS3ST5
heparan sulfate (glucosamine) 3-O-sulfotransferase 5
heparan sulfate (glucosamine) 3-O-sulfotransferase 6
Other alias3-OST-6
HGNC (Hugo) HS3ST6
LocusID (NCBI) 64711
Atlas_Id 64431
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1911464 and ends at 1918323 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS3ST6   14178
Cards
Entrez_Gene (NCBI)HS3ST6  64711  heparan sulfate-glucosamine 3-sulfotransferase 6
Aliases3-OST-6; HS3ST5
GeneCards (Weizmann)HS3ST6
Ensembl hg19 (Hinxton)ENSG00000162040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162040 [Gene_View]  chr16:1911464-1918323 [Contig_View]  HS3ST6 [Vega]
ICGC DataPortalENSG00000162040
TCGA cBioPortalHS3ST6
AceView (NCBI)HS3ST6
Genatlas (Paris)HS3ST6
WikiGenes64711
SOURCE (Princeton)HS3ST6
Genetics Home Reference (NIH)HS3ST6
Genomic and cartography
GoldenPath hg38 (UCSC)HS3ST6  -     chr16:1911464-1918323 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HS3ST6  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblHS3ST6 - 16p13.3 [CytoView hg19]  HS3ST6 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIHS3ST6 [Mapview hg19]  HS3ST6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156438 BC172540 CK300523 DY654407
RefSeq transcript (Entrez)NM_001009606
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187609
Consensus coding sequences : CCDS (NCBI)HS3ST6
Cluster EST : UnigeneHs.670144 [ NCBI ]
CGAP (NCI)Hs.670144
Alternative Splicing GalleryENSG00000162040
Gene ExpressionHS3ST6 [ NCBI-GEO ]   HS3ST6 [ EBI - ARRAY_EXPRESS ]   HS3ST6 [ SEEK ]   HS3ST6 [ MEM ]
Gene Expression Viewer (FireBrowse)HS3ST6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64711
GTEX Portal (Tissue expression)HS3ST6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QI5
Splice isoforms : SwissVarQ96QI5
Catalytic activity : Enzyme2.8.2.23 [ Enzyme-Expasy ]   2.8.2.232.8.2.23 [ IntEnz-EBI ]   2.8.2.23 [ BRENDA ]   2.8.2.23 [ KEGG ]   
PhosPhoSitePlusQ96QI5
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)HS3ST6
DMDM Disease mutations64711
Blocks (Seattle)HS3ST6
SuperfamilyQ96QI5
Human Protein AtlasENSG00000162040
Peptide AtlasQ96QI5
HPRD17115
IPIIPI00289954   IPI00940185   
Protein Interaction databases
DIP (DOE-UCLA)Q96QI5
IntAct (EBI)Q96QI5
FunCoupENSG00000162040
BioGRIDHS3ST6
STRING (EMBL)HS3ST6
ZODIACHS3ST6
Ontologies - Pathways
QuickGOQ96QI5
Ontology : AmiGOGolgi membrane  glycosaminoglycan biosynthetic process  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  glycosaminoglycan biosynthetic process  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity  integral component of membrane  
NDEx NetworkHS3ST6
Atlas of Cancer Signalling NetworkHS3ST6
Wikipedia pathwaysHS3ST6
Orthology - Evolution
OrthoDB64711
GeneTree (enSembl)ENSG00000162040
Phylogenetic Trees/Animal Genes : TreeFamHS3ST6
HOVERGENQ96QI5
HOGENOMQ96QI5
Homologs : HomoloGeneHS3ST6
Homology/Alignments : Family Browser (UCSC)HS3ST6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS3ST6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HS3ST6
dbVarHS3ST6
ClinVarHS3ST6
1000_GenomesHS3ST6 
Exome Variant ServerHS3ST6
ExAC (Exome Aggregation Consortium)HS3ST6 (select the gene name)
Genetic variants : HAPMAP64711
Genomic Variants (DGV)HS3ST6 [DGVbeta]
DECIPHERHS3ST6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHS3ST6 
Mutations
ICGC Data PortalHS3ST6 
TCGA Data PortalHS3ST6 
Broad Tumor PortalHS3ST6
OASIS PortalHS3ST6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS3ST6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHS3ST6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS3ST6
DgiDB (Drug Gene Interaction Database)HS3ST6
DoCM (Curated mutations)HS3ST6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS3ST6 (select a term)
intoGenHS3ST6
Cancer3DHS3ST6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHS3ST6
Genetic Testing Registry HS3ST6
NextProtQ96QI5 [Medical]
TSGene64711
GENETestsHS3ST6
Target ValidationHS3ST6
Huge Navigator HS3ST6 [HugePedia]
snp3D : Map Gene to Disease64711
BioCentury BCIQHS3ST6
ClinGenHS3ST6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64711
Chemical/Pharm GKB GenePA29474
Clinical trialHS3ST6
Miscellaneous
canSAR (ICR)HS3ST6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS3ST6
EVEXHS3ST6
GoPubMedHS3ST6
iHOPHS3ST6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.