Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HS6ST1 (heparan sulfate 6-O-sulfotransferase 1)

Identity

Alias (NCBI)HH15
HS6ST
HGNC (Hugo) HS6ST1
HGNC Previous nameHS6ST
LocusID (NCBI) 9394
Atlas_Id 54037
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 128265480 and ends at 128318868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PEBP1 (12q24.23) / HS6ST1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)HS6ST1   5201
Cards
Entrez_Gene (NCBI)HS6ST1    heparan sulfate 6-O-sulfotransferase 1
AliasesHH15; HS6ST
GeneCards (Weizmann)HS6ST1
Ensembl hg19 (Hinxton)ENSG00000136720 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136720 [Gene_View]  ENSG00000136720 [Sequence]  chr2:128265480-128318868 [Contig_View]  HS6ST1 [Vega]
ICGC DataPortalENSG00000136720
TCGA cBioPortalHS6ST1
AceView (NCBI)HS6ST1
Genatlas (Paris)HS6ST1
SOURCE (Princeton)HS6ST1
Genetics Home Reference (NIH)HS6ST1
Genomic and cartography
GoldenPath hg38 (UCSC)HS6ST1  -     chr2:128265480-128318868 -  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HS6ST1  -     2q14.3   [Description]    (hg19-Feb_2009)
GoldenPathHS6ST1 - 2q14.3 [CytoView hg19]  HS6ST1 - 2q14.3 [CytoView hg38]
ImmunoBaseENSG00000136720
genome Data Viewer NCBIHS6ST1 [Mapview hg19]  
OMIM604846   614880   
Gene and transcription
Genbank (Entrez)AB006179 AK058121 AK293724 AK295898 AK304326
RefSeq transcript (Entrez)NM_004807
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HS6ST1
Alternative Splicing GalleryENSG00000136720
Gene ExpressionHS6ST1 [ NCBI-GEO ]   HS6ST1 [ EBI - ARRAY_EXPRESS ]   HS6ST1 [ SEEK ]   HS6ST1 [ MEM ]
Gene Expression Viewer (FireBrowse)HS6ST1 [ Firebrowse - Broad ]
GenevisibleExpression of HS6ST1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9394
GTEX Portal (Tissue expression)HS6ST1
Human Protein AtlasENSG00000136720-HS6ST1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60243   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60243  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60243
Splice isoforms : SwissVarO60243
PhosPhoSitePlusO60243
Domains : Interpro (EBI)Heparan_SO4-6-sulfoTrfase    P-loop_NTPase    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)HS6ST1
Blocks (Seattle)HS6ST1
SuperfamilyO60243
Human Protein Atlas [tissue]ENSG00000136720-HS6ST1 [tissue]
Peptide AtlasO60243
HPRD07274
IPIIPI00028449   IPI00929423   
Protein Interaction databases
DIP (DOE-UCLA)O60243
IntAct (EBI)O60243
BioGRIDHS6ST1
STRING (EMBL)HS6ST1
ZODIACHS6ST1
Ontologies - Pathways
QuickGOO60243
Ontology : AmiGOGolgi membrane  protein binding  integral component of plasma membrane  glycosaminoglycan biosynthetic process  sulfotransferase activity  heparan sulfate proteoglycan biosynthetic process, enzymatic modification  heparan sulfate 6-O-sulfotransferase activity  neuron development  
Ontology : EGO-EBIGolgi membrane  protein binding  integral component of plasma membrane  glycosaminoglycan biosynthetic process  sulfotransferase activity  heparan sulfate proteoglycan biosynthetic process, enzymatic modification  heparan sulfate 6-O-sulfotransferase activity  neuron development  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkHS6ST1
Atlas of Cancer Signalling NetworkHS6ST1
Wikipedia pathwaysHS6ST1
Orthology - Evolution
OrthoDB9394
GeneTree (enSembl)ENSG00000136720
Phylogenetic Trees/Animal Genes : TreeFamHS6ST1
HOGENOMO60243
Homologs : HomoloGeneHS6ST1
Homology/Alignments : Family Browser (UCSC)HS6ST1
Gene fusions - Rearrangements
Fusion : QuiverHS6ST1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS6ST1 [hg38]
dbVarHS6ST1
ClinVarHS6ST1
MonarchHS6ST1
1000_GenomesHS6ST1 
Exome Variant ServerHS6ST1
GNOMAD BrowserENSG00000136720
Varsome BrowserHS6ST1
Genomic Variants (DGV)HS6ST1 [DGVbeta]
DECIPHERHS6ST1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHS6ST1 
Mutations
ICGC Data PortalHS6ST1 
TCGA Data PortalHS6ST1 
Broad Tumor PortalHS6ST1
OASIS PortalHS6ST1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS6ST1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHS6ST1
Mutations and Diseases : HGMDHS6ST1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS6ST1
DgiDB (Drug Gene Interaction Database)HS6ST1
DoCM (Curated mutations)HS6ST1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS6ST1 (select a term)
intoGenHS6ST1
Cancer3DHS6ST1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604846    614880   
Orphanet3249    8668   
DisGeNETHS6ST1
MedgenHS6ST1
Genetic Testing Registry HS6ST1
NextProtO60243 [Medical]
GENETestsHS6ST1
Target ValidationHS6ST1
Huge Navigator HS6ST1 [HugePedia]
ClinGenHS6ST1
Clinical trials, drugs, therapy
MyCancerGenomeHS6ST1
Protein Interactions : CTD
Pharm GKB GenePA35102
PharosO60243
Clinical trialHS6ST1
Miscellaneous
canSAR (ICR)HS6ST1 (select the gene name)
HarmonizomeHS6ST1
DataMed IndexHS6ST1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHS6ST1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:25:42 CET 2021

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