Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HS6ST1 (heparan sulfate 6-O-sulfotransferase 1)

Identity

Alias_namesHS6ST
Other aliasHH15
HGNC (Hugo) HS6ST1
LocusID (NCBI) 9394
Atlas_Id 54037
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 129023054 and ends at 129076171 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PEBP1 (12q24.23) / HS6ST1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HS6ST1   5201
Cards
Entrez_Gene (NCBI)HS6ST1  9394  heparan sulfate 6-O-sulfotransferase 1
AliasesHH15; HS6ST
GeneCards (Weizmann)HS6ST1
Ensembl hg19 (Hinxton)ENSG00000136720 [Gene_View]  chr2:129023054-129076171 [Contig_View]  HS6ST1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136720 [Gene_View]  chr2:129023054-129076171 [Contig_View]  HS6ST1 [Vega]
ICGC DataPortalENSG00000136720
TCGA cBioPortalHS6ST1
AceView (NCBI)HS6ST1
Genatlas (Paris)HS6ST1
WikiGenes9394
SOURCE (Princeton)HS6ST1
Genetics Home Reference (NIH)HS6ST1
Genomic and cartography
GoldenPath hg19 (UCSC)HS6ST1  -     chr2:129023054-129076171 -  2q14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HS6ST1  -     2q14.3   [Description]    (hg38-Dec_2013)
EnsemblHS6ST1 - 2q14.3 [CytoView hg19]  HS6ST1 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBIHS6ST1 [Mapview hg19]  HS6ST1 [Mapview hg38]
OMIM604846   614880   
Gene and transcription
Genbank (Entrez)AB006179 AK058121 AK293724 AK295898 AK304326
RefSeq transcript (Entrez)NM_004807
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_032966 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)HS6ST1
Cluster EST : UnigeneHs.715359 [ NCBI ]
CGAP (NCI)Hs.715359
Alternative Splicing GalleryENSG00000136720
Gene ExpressionHS6ST1 [ NCBI-GEO ]   HS6ST1 [ EBI - ARRAY_EXPRESS ]   HS6ST1 [ SEEK ]   HS6ST1 [ MEM ]
Gene Expression Viewer (FireBrowse)HS6ST1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9394
GTEX Portal (Tissue expression)HS6ST1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60243   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60243  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60243
Splice isoforms : SwissVarO60243
PhosPhoSitePlusO60243
Domains : Interpro (EBI)Heparan_SO4-6-sulfoTrfase    P-loop_NTPase    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)HS6ST1
DMDM Disease mutations9394
Blocks (Seattle)HS6ST1
SuperfamilyO60243
Human Protein AtlasENSG00000136720
Peptide AtlasO60243
HPRD07274
IPIIPI00028449   IPI00929423   
Protein Interaction databases
DIP (DOE-UCLA)O60243
IntAct (EBI)O60243
FunCoupENSG00000136720
BioGRIDHS6ST1
STRING (EMBL)HS6ST1
ZODIACHS6ST1
Ontologies - Pathways
QuickGOO60243
Ontology : AmiGOGolgi membrane  angiogenesis  integral component of plasma membrane  glycosaminoglycan biosynthetic process  sulfotransferase activity  heparan sulfate proteoglycan biosynthetic process, enzymatic modification  heparan sulfate 6-O-sulfotransferase activity  heparan sulfate 6-O-sulfotransferase activity  lung alveolus development  neuron development  labyrinthine layer blood vessel development  
Ontology : EGO-EBIGolgi membrane  angiogenesis  integral component of plasma membrane  glycosaminoglycan biosynthetic process  sulfotransferase activity  heparan sulfate proteoglycan biosynthetic process, enzymatic modification  heparan sulfate 6-O-sulfotransferase activity  heparan sulfate 6-O-sulfotransferase activity  lung alveolus development  neuron development  labyrinthine layer blood vessel development  
Pathways : KEGGGlycosaminoglycan biosynthesis - heparan sulfate / heparin   
NDEx NetworkHS6ST1
Atlas of Cancer Signalling NetworkHS6ST1
Wikipedia pathwaysHS6ST1
Orthology - Evolution
OrthoDB9394
GeneTree (enSembl)ENSG00000136720
Phylogenetic Trees/Animal Genes : TreeFamHS6ST1
HOVERGENO60243
HOGENOMO60243
Homologs : HomoloGeneHS6ST1
Homology/Alignments : Family Browser (UCSC)HS6ST1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHS6ST1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HS6ST1
dbVarHS6ST1
ClinVarHS6ST1
1000_GenomesHS6ST1 
Exome Variant ServerHS6ST1
ExAC (Exome Aggregation Consortium)HS6ST1 (select the gene name)
Genetic variants : HAPMAP9394
Genomic Variants (DGV)HS6ST1 [DGVbeta]
DECIPHER (Syndromes)2:129023054-129076171  ENSG00000136720
CONAN: Copy Number AnalysisHS6ST1 
Mutations
ICGC Data PortalHS6ST1 
TCGA Data PortalHS6ST1 
Broad Tumor PortalHS6ST1
OASIS PortalHS6ST1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHS6ST1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHS6ST1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HS6ST1
DgiDB (Drug Gene Interaction Database)HS6ST1
DoCM (Curated mutations)HS6ST1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HS6ST1 (select a term)
intoGenHS6ST1
Cancer3DHS6ST1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604846    614880   
Orphanet3249    8668   
MedgenHS6ST1
Genetic Testing Registry HS6ST1
NextProtO60243 [Medical]
TSGene9394
GENETestsHS6ST1
Huge Navigator HS6ST1 [HugePedia]
snp3D : Map Gene to Disease9394
BioCentury BCIQHS6ST1
ClinGenHS6ST1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9394
Chemical/Pharm GKB GenePA35102
Clinical trialHS6ST1
Miscellaneous
canSAR (ICR)HS6ST1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHS6ST1
EVEXHS6ST1
GoPubMedHS6ST1
iHOPHS6ST1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:47 CET 2017

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